GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 13:41:54, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Elaeis guineensis isotig08567.Elguifruit mRNA sequence.
JO095797.1:271-294
ATAATACAAATTTATGTAGATTTAACTTAG271AAGTGGTGGCTTCTAAGCCGGTATGAGGAAGCGAGGCTTCTTGAAGGCCAGGGG
OPZE00019 Elaeis guineensis zygotic embryo Elaeis guineensis cDNA clone 183-B4-T3.seq, mRNA sequence.
EL694934.1:255-278
CCCCTGGCCTTCAAGAAGCCTCGCTTCCTC255ATACCGGCTTAGAAGCCACCACTTCTAAGTTAAATCTACATAAATTTGTATTAT
Contig62 DEGdwarf cDNA library from oil palm spear leaves Elaeis guineensis cDNA clone Contig62, mRNA sequence.
JZ905568.1:233-256
CCCCTGGCCTTCAAGAAGCCTCGCTTCCTC233ATACCGGCTTAGAAGCCACCACTTCTAAGTTAAATCTACATAAATTTGTATTAT
Elaeis guineensis EST, clone (6lib)_isotig06359.
LM624157.1:791-814
CCCCTGGCCTTCAAGAAGCCTCGCTTCCTC791ATACCGGCTTAGAAGCCACCACTTCTAAGTTAAATCTACATAAATTTGTATTAT
Elaeis guineensis clone estEgSNP10 zinc-finger protein (ZFP) mRNA, partial cds.
JX438710.1:790-813
CCCCTGGCCTTCAAGAAGCCTCGCTTCCTC790ATACCGGCTTAGAAGCCACCACTTCTAAGTTAAATCTACATAAATTTGTATTAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AAGTGGTGGCTTCTAAGCCGGTAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AAGTGGTGGCTTCTAAGCCGGTAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.124 | 0.115 | search_plus_done; http://172.18.8.135:50400/match?q=AAGTGGTGGCTTCTAAGCCGGTAT&k=0&no_gap=0&offset=0&limit=50
0.366 | 0.242 | search_minus_done; http://172.18.8.135:50400/match?q=ATACCGGCTTAGAAGCCACCACTT&k=0&no_gap=0&offset=0&limit=49
0.369 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).