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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-06 06:11:50, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

GA__Eb0039I16f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0039I16f, mRNA sequence.
BG446845.1:21-42
CTTGGAGGTCATAAACACTA21AATAATCGAACTCATTCTCACCGCCACCGCCACCGCCATCGCCATCTACACC
GA__Ed0080G10f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0080G10f, mRNA sequence.
BQ405276.1:19-40
TGGAGGTCATAAACACTA19AATAATCGAACTCATTCTCACCGCCACCGCCACCGCCATCGCCATCTCCACC
CM039F01 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
DR455946.1:2-23
A2AATAATCGAACTCATTCTCACCGCCACCGCCATCGCCATCTCCACCGCCACC
EST010071 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 45-O15 5', mRNA sequence.
GR716871.1:9-30
AAACACTA9AATAATCGAACTCATTCTCACCGCCACCGCCACCGCCATCGCCATCTCCACC
ndcxc0_0025_G01.ab1 Upland cotton seedling roots at 0h control (ndcxc) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ375984.1:18-39
GGAGGTCATAAACACTA18AATAATCGAACTCATTCTCACCGCCACCGCCACCGCCATCGCCATCTCCACC
ndcxd0_0028_H01.ab1 Upland cotton seedling roots at salt stress 48h (ndcxd) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ379022.1:18-39
GGAGGTCATAAACACTA18AATAATCGAACTCATTCTCACCGCCACCGCCACCGCCATCGCCATCTCCACC
ndcxd0_0033_E08.ab1 Upland cotton seedling roots at salt stress 48h (ndcxd) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ379403.1:17-38
GAGGTCATAAACACTA17AATAATCGAACTCATTCTCACCGCCACCGCCACCGCCATCGCCATCTCCACC
Gossypium raimondii isolate D5-4 chromosome D5_02.
CP032554.1:620043-620064
CATGTTTCCTCTTGGCGGTCATAAACACCA620043AATAATCGAACTCATTCTCACCGCCACCGCCACCGCCATCGCCACCGCCTCT
Gossypium turneri isolate D10-2 chromosome D10_02.
CP032572.1:580503-580524
CATGTTTCCTCTTGGCGGTCATAAACACTA580503AATAATCGAACTCATTCTCACCGCCACCGCCATCGCCATCGCCACCGCCTCT
Gossypium herbaceum isolate GPA1alz chromosome 2.
CP106707.1:622405-622426
CATGTTTCCTCTTGGAGGTCATAAACACTA622405AATAATCGAACTCATTCTCACCGCCACCGCCACCGCCATCGCCATCGCCATC
Gossypium herbaceum isolate Zhongcao1 chromosome 2.
CP106694.1:94238787-94238808
GGTGGAGATGGCGATGGCGGTGGCGGTGGC94238787GGTGAGAATGAGTTCGATTATTTAGTGTTTATGACCTCCAAGAGGAAACATG
Gossypium bickii isolate GPG1lz chromosome 2.
CP106718.1:107406723-107406744
AGAGGCGGTGGCGATGGCGATGGCGGTGGC107406723GGTGAGAATGAGTTCGATTATTTAGTGTTTATGACCGCCAAGAGGAAACATG
Gossypium rotundifolium isolate GPK201 chromosome 2.
CP106723.1:138974996-138975017
AGAGGCGATGGCGATGGCGGTGGCGATGGC138974996GGTGAGAATGAGTTCGATTATTAGTGTTTATGACCGCCAAGAGGAAACTTGC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AATAATCGAACTCATTCTCACC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AATAATCGAACTCATTCTCACC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.524 | 0.515 | search_plus_done; http://172.18.8.135:50400/match?q=AATAATCGAACTCATTCTCACC&k=0&no_gap=0&offset=0&limit=50
0.561 | 0.037 | search_minus_done; http://172.18.8.135:50400/match?q=GGTGAGAATGAGTTCGATTATT&k=0&no_gap=0&offset=0&limit=40
0.563 | 0.002 | cgi_end;

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