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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-05 19:29:55, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_21721.
FX724924.1:218-237
TTGATCTTACCGCCAGCCATTTTCGAATCG218AATACGCGAGAGTGTGAGAGAGAGATTGAAGATGAGATTTTACAAAGTGA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB058F21, complete sequence.
AC189404.2:50764-50783
CGAAGGAGATGCTCACCCATTTTCGAATCG50764AATACGCGAGAGTGTGAGAGAGAGATTGAAGATGAGATTTTACAAAGTGA
Watersipora subatra genome assembly, chromosome: 1.
OY755158.1:16501051-16501070
TCGGTCATCTTCCTTTAGATCTCTTGCAGC16501051AATACGCGAGAGTGTGAGAGTTGAGCTCTCTGATTAAACAACAAGATGTA
BR020856 floral bud cDNA library KBFL Brassica rapa subsp. pekinensis cDNA clone KBFL-006E01 5', mRNA sequence.
EX036212.1:29-48
CCTTTGTAAAATCTCATCTTCAATCTCT29CTCTCACACTCTCGCGTATTCGATTCGAAAATGGCTGGCGGTAAGATCAA
BR072250 flower cDNA library KFFB Brassica rapa subsp. pekinensis cDNA clone KFFB-005E11 5', mRNA sequence.
EX085960.1:54-73
TCACTTTGTAAAATCTCATCTTCAATCTCT54CTCTCACACTCTCGCGTATTCGATTCGAAAATGGCTGGCGGTAAGATCAA
BR072259 flower cDNA library KFFB Brassica rapa subsp. pekinensis cDNA clone KFFB-005F11 5', mRNA sequence.
EX085969.1:52-71
TCACTTTGTAAAATCTCATCTTCAATCTCT52CTCTCACACTCTCGCGTATTCGATTCGAAAATGGCTGGCGGTAAGATCAA
BR119481 root cDNA library KHRT Brassica rapa subsp. pekinensis cDNA clone KHRT-61A07 5', mRNA sequence.
EX135651.1:30-49
CACTTTGTAAAATCTCATCTTCAATCTCT30CTCTCACACTCTCGCGTATTCGATTCGAAAATGGCTGGCGGTAAGATCAA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB016C20, *** SEQUENCING IN PROGRESS ***, 7 ordered pieces.
AC240994.1:47657-47676
TCACTTTGTAAAATCTCATCTTCAATCTCT47657CTCTCACACTCTCGCGTATTCGATTCGAAAATGGGTGAGCATCTCCTTCG
Brassica rapa subsp. pekinensis clone KBrH121D17, complete sequence.
FP325328.1:39369-39388
TCACTTTGTAAAATCTCATCTTCAATCTCT39369CTCTCACACTCTCGCGTATTCGATTCGAAAATGGGTGAGCATCTCCTTCG
Brassica napus genome assembly, chromosome: A03.
HG994357.1:15408607-15408626
TCACTTTGTAAAATCTCATCTTCAATCTCT15408607CTCTCACACTCTCGCGTATTCGATTCGAAAATGGGTGAGCATCTCCTTCG
Brassica rapa genome, scaffold: A03.
LR031572.1:15184973-15184992
TAAAATACTAAAATCTCATCTTCAATCTCT15184973CTCTCACACTCTCGCGTATTCGATTCGAAAATGGGTGAGCATCTCCTTCG
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:15311119-15311138
TAAAATACTAAAATCTCATCTTCAATCTCT15311119CTCTCACACTCTCGCGTATTCGATTCGAAAATGGGTGAGCATCTCCTTCG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AATACGCGAGAGTGTGAGAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AATACGCGAGAGTGTGAGAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.334 | 0.325 | search_plus_done; http://172.18.8.135:50400/match?q=AATACGCGAGAGTGTGAGAG&k=0&no_gap=0&offset=0&limit=50
0.919 | 0.586 | search_minus_done; http://172.18.8.135:50400/match?q=CTCTCACACTCTCGCGTATT&k=0&no_gap=0&offset=0&limit=47
0.925 | 0.006 | cgi_end;

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