GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 10:06:17, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

UFL_217_41 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES816563.1:134-153
TTCTAAAGAAAGAAGAGAAGATAAGAAGGA134AATAGGATCCTGTGGCTGTGGCGTTTGTTTGTGTTGGAACTTCCAATTTC
ndcxe0_0002_F12.ab1 Upland cotton seedling roots at 3h control (ndcxe) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ379758.1:167-186
TTCTAAAGAAAGAAGAGAAGATAAGAAGGA167AATAGGATCCTGTGGCTGTGGCTGTGGCTGTGGCTGTGGCGTTTATTTGT
Gossypium herbaceum isolate Zhongcao1 chromosome 2.
CP106694.1:81506414-81506433
TTCTAAAGAAAGAAGAGAAGATAAGAAGGA81506414AATAGGATCCTGTGGCTGTGGCTGTGGCTGTGGCGTTTTTTTGTGTTGGA
Gossypium rotundifolium isolate GPK201 chromosome 2.
CP106723.1:119976720-119976739
TTCTAAAGAAAGAAGAGAAGATAAGAAGGA119976720AATAGGATCCTGTGGCTGTGGCGTTTGTTTGTGTTGGAACTTCCAATTTC
GA__Ed0049G06f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0049G06f, mRNA sequence.
BQ402465.1:605-624
TCCAACACAAATAAACGCCACAGCCACAGC605CACAGCCACAGGATCCTATTTCCTTCTTATCTTCTCTTCTTTCTTTAAAA
Gossypium turneri isolate D10-2 chromosome D10_02.
CP032572.1:8803523-8803542
GAAATTGGAAGTTCCAACACAAACAAACGC8803523CACAGCCACAGGATCCTATTTCCTTCTTATCTTCTCTTCTTTCTTTAGAA
Gossypium herbaceum isolate GPA1alz chromosome 2.
CP106707.1:13322828-13322847
TCCAACACAAAAAAACGCCACAGCCACAGC13322828CACAGCCACAGGATCCTATTTCCTTCTTATCTTCTCTTCTTTCTTTAGAA
Drepana falcataria genome assembly, chromosome: 1.
OX243922.1:1012934-1012953
ACTCCTTGACAGTACTTTTATTTTAGAACA1012934CACAGCCACAGGATCCTATTTCTTTGACTGTAAGCCTGACTTCAACTCTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AATAGGATCCTGTGGCTGTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AATAGGATCCTGTGGCTGTG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.237 | 0.228 | search_plus_done; http://172.18.8.135:50400/match?q=AATAGGATCCTGTGGCTGTG&k=0&no_gap=0&offset=0&limit=50
0.284 | 0.047 | search_minus_done; http://172.18.8.135:50400/match?q=CACAGCCACAGGATCCTATT&k=0&no_gap=0&offset=0&limit=46
0.286 | 0.003 | cgi_end;

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