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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-09 18:18:15, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Mus musculus chromosome 8, clone RP23-64K12, complete sequence.
AC100244.12:110251-110268
AAAGAATATGATGGCAGGAGAGGCAGAAAG110251AATATAAGAGCCAGAGGCTGTAGGACAGAGGTATGGAACTCTGGATTC
Mus musculus BAC clone RP23-80L14 from chromosome 1, complete sequence.
AC116318.7:188434-188451
TGCAGTTGAGGGGGTGGAAACAATATAAGA188434AATATAAGAGCCAGAGGCAGTGGTTGACTACAAACAAACAGTGTCTTC
Mus musculus BAC clone RP23-401P15 from chromosome 14, complete sequence.
AC122356.4:122898-122915
TAAATCTTTAAAAAAAAAAGTGACTGGAAG122898AATATAAGAGCCAGAGGCTGGGGAGTGGCTGTGTGCAGTGCTGCCTTC
Mus musculus BAC clone RP24-496C20 from 1, complete sequence.
AC131797.3:10109-10126
TGCAGTTGAGGGGGTGGAAACAATATAAGA10109AATATAAGAGCCAGAGGCAGTGGTTGACTACAAACAAACAGTGTCTTC
Arvicola amphibius genome assembly, chromosome: 3.
LR862382.1:32969743-32969760
CCTCCCCTCAATTTTCAGGGAAGAGGAAAG32969743AATATAAGAGCCAGAGGCGATGGAGAACACAAAGGAAACAAGGCGTTT
Onychomys torridus genome assembly, chromosome: 1.
LR877188.1:171006384-171006401
CAGAGAACCCAATACCAGAGGAACAGAAAT171006384AATATAAGAGCCAGAGGCAATGGAGCCCCACCCAAAACAAGACCCTTC
Onychomys torridus genome assembly, chromosome: 6.
LR877193.1:89880552-89880569
GCTCAGGAAACACTAAGGAAGAGGAGGCAG89880552AATATAAGAGCCAGAGGCAGAGGCAGAGGCAGAGTGCTTTAAGATTCT
Onychomys torridus genome assembly, chromosome: 12.
LR877199.1:35826894-35826911
AGGGAACATCTCCGAAGAGGAGGCAGAAGG35826894AATATAAGAGCCAGAGGCTAGGAAGGAATGCTATGAAATGCTGTCATC
Acomys russatus genome assembly, chromosome: X.
LR877244.1:115866979-115866996
AGGAACTATTTTGGAAGAGAAGATTGAAAG115866979AATATAAGAGCCAGAGGCTAGGGAGGACCCAACTGAAAAAGTGGCTTC
Acomys kempi genome assembly, chromosome: 6.
OU015360.1:120287858-120287875
CAGGCTGTAGGAATACTTTAGGGGGCGAAA120287858AATATAAGAGCCAGAGGCTCTGGAACACTACTGTGAGATTGTGTCTCC
Acomys kempi genome assembly, chromosome: 8.
OU015362.1:43294715-43294732
AAACCATTGTAGAAGAGGGAGCAGAAAAAG43294715AATATAAGAGCCAGAGGCAATGAATGACTACAAGGAAATGATGTGCTT
Acomys kempi genome assembly, chromosome: X.
OU015373.1:12110354-12110371
GGGGAACACTGAAGAAAAGAAGAGAGAAAA12110354AATATAAGAGCCAGAGGCTGGGGAGGAATGTTGCCAAATGTTGTCCTT
Acomys kempi genome assembly, chromosome: X.
OU015373.1:106926392-106926409
AGGAACTATTTTGGAAGAGAAGATGGAAAG106926392AATATAAGAGCCAGAGGCTAGGGAAGACCCAACTGAAAAAGTGTCTTC
Acomys dimidiatus genome assembly, chromosome: 6.
OU015379.1:117268822-117268839
CAGGCTGTAGGAATACTTTAGTGGGTGAAA117268822AATATAAGAGCCAGAGGCTCTGGAACACTACTGTGAGATTGTGTCTCC
Acomys dimidiatus genome assembly, chromosome: 8.
OU015381.1:44361645-44361662
AAACCATTGTAGAAGAGGGAGCAGAAAAAG44361645AATATAAGAGCCAGAGGCAATTAATGACTACAAGGAAATTATGTGCTT
Acomys percivali genome assembly, chromosome: 12.
OU015753.1:14582333-14582350
AAGGAACCCTGTGGAAGAGGAGGCAGAAAG14582333AATATAAGAGCCAGAGGCAGTGTAAGGACATCAATAAAGCAAGGCCTC
Acomys percivali genome assembly, chromosome: 14.
OU015755.1:21039970-21039987
AGGGAAAATCATGGGAGAAGGGGAGGAAAG21039970AATATAAGAGCCAGAGGCACAGGATTCCCACTGTTAGACAGTGTTTGT
Acomys percivali genome assembly, chromosome: X.
OU015760.1:12263620-12263637
GGGGAACACTGAAGAAAAGAAGGGAGAAAG12263620AATATAAGAGCCAGAGGCTGGGGAGGAGTGTTGTCAAATGTCCTTTGG
Mus musculus genome assembly, chromosome: 14.
OW971556.1:68075164-68075181
TAAATCTTTAAAAAAAAAAGTGACTGGAAG68075164AATATAAGAGCCAGAGGCTGGGGAGTGGCTGTGTGCAGTGCTGCCTTC
Mus musculus genome assembly, chromosome: 3.
OW971563.1:76623525-76623542
AAGGATCACTGTAGAAGAGGGAACAGAACG76623525AATATAAGAGCCAGAGGCAGGGGATGACTACACAGCGTCTTCTCGACA
Mus musculus genome assembly, chromosome: 3.
OW971575.1:76255248-76255265
AAGGATCACTGTAGAAGAGGGAACAGAACG76255248AATATAAGAGCCAGAGGCAGGGGATGACTACACAGCGTCTTCTCGACA
Mus musculus genome assembly, chromosome: 10.
OW971581.1:79056779-79056796
TTGTGATCATCAAGGAAGAGGAGTAGAAAG79056779AATATAAGAGCCAGAGGCTCAGGATGAAAGCACAAAAAGAGGGCTTTC
Mus musculus genome assembly, chromosome: 14.
OW971586.1:68493898-68493915
TAAATCTTAAAAAAAAATAGTGACTGGAAA68493898AATATAAGAGCCAGAGGCTGGGGAGTGGCTGTGTGCAGTGCTGCCTTC
Mus musculus genome assembly, chromosome: 3.
OW971596.1:76247920-76247937
AAGGATCACTGTAGAAGAGGGAACAGAACG76247920AATATAAGAGCCAGAGGCAGGGGATGACTACACAGCGTCTTCTCGACA
Mus musculus genome assembly, chromosome: 10.
OW971602.1:78929115-78929132
TTGTGATCATCAAGGAAGAGGAGTAGAAAG78929115AATATAAGAGCCAGAGGCTCAGGATGAAAGCACAAAAAGAGGGCTTTC
Mus musculus genome assembly, chromosome: 14.
OW971607.1:67857796-67857813
TAAATCTTAAAAAAAAATAGTGACTGGAAA67857796AATATAAGAGCCAGAGGCTGGGGAGTGGCTGTGTGCAGTGCTGCCTTC
Mus musculus domesticus genome assembly, chromosome: 14.
OW971619.1:67667288-67667305
TAAATCTTAAAAAAAAATAGTGACTGGAAA67667288AATATAAGAGCCAGAGGCTGGGGAGTGGCTGTGTGCAGTGCTGCCTTC
Mus musculus domesticus genome assembly, chromosome: 3.
OW971625.1:76656906-76656923
AAGGATCACTGTAGAAGAGGGAACAGAACG76656906AATATAAGAGCCAGAGGCAGGGGATGACTACACAGCGTCTTCTCGACA
Mus musculus genome assembly, chromosome: 3.
OW971638.1:76326676-76326693
AAGGATCACTGTAGAAGAGGGAACAGAACG76326676AATATAAGAGCCAGAGGCAGGGGATGACTACACAGCGTCTTCTCGACA
Mus musculus genome assembly, chromosome: 10.
OW971644.1:79330007-79330024
TTGTGATCATCAAGGAAGAGGAGTAGAAAG79330007AATATAAGAGCCAGAGGCTCAGGATGAAAGCACAAAAAGAGGGCTTTC
Mus musculus genome assembly, chromosome: 14.
OW971650.1:68072435-68072452
TAAATCTTTAAAAAAAAAAGTGACTGGAAG68072435AATATAAGAGCCAGAGGCTGGGGAGTGGCTGTGTGCAGTGCTGCCTTC
Mus musculus molossinus genome assembly, chromosome: 3.
OW971660.1:75991244-75991261
AAGGATCACTGTAGAAGAGGGAACAGAACG75991244AATATAAGAGCCAGAGGCAGGGGATGACTACACAGCGTCTTCTGGACA
Mus musculus molossinus genome assembly, chromosome: 10.
OW971667.1:80654554-80654571
TTGTGATCATCAAGGAAGAGGAGTAGAAAG80654554AATATAAGAGCCAGAGGCTCAGGATGAAAGCACAAAAAGAGGGCTTTC
Mus spretus genome assembly, chromosome: 3.
OW971680.1:76799375-76799392
AAGGACCACTGTAGAAGAGGGAACAGAAAG76799375AATATAAGAGCCAGAGGCAGGGGATGACTACACAGCATCTTCTGGACA
Mus spretus genome assembly, chromosome: 10.
OW971686.1:80450343-80450360
TTGTGATCATCAAGGAAGAGGAGTAGAAAG80450343AATATAAGAGCCAGAGGCTCAGGATGAAAGCACAAAAAGAGGGCTTTC
Mus musculus genome assembly, chromosome: 10.
OW971700.1:78983793-78983810
TTGTGATCATCAAGGAAGAGGAGTAGAAAG78983793AATATAAGAGCCAGAGGCTCAGGATGAAAGCACAAAAAGAGGGCTTTC
Mus musculus genome assembly, chromosome: 14.
OW971704.1:67903657-67903674
TAAATCTTTAAAAAAAAAAGTGACTGGAAG67903657AATATAAGAGCCAGAGGCTGGGGAGTGGCTGTGTGCAGTGCTGCCTTC
Mus musculus genome assembly, chromosome: 3.
OW971711.1:75267979-75267996
AAGGATCACTGTAGAAGAGGGAACAGAACG75267979AATATAAGAGCCAGAGGCAGGGGATGACTACACAGCGTCTTCTCGACA
Mus musculus genome assembly, chromosome: 3.
OW971722.1:76171733-76171750
AAGGATCACTGTAGAAGAGGGAACAGAACG76171733AATATAAGAGCCAGAGGCAGGGGATGACTACACAGCGTCTTCTCGACA
Mus musculus genome assembly, chromosome: 10.
OW971728.1:78877732-78877749
TTGTGATCATCAAGGAAGAGGAGTAGAAAG78877732AATATAAGAGCCAGAGGCTCAGGATGAAAGCACAAAAAGAGGGCTTTC
Mus musculus genome assembly, chromosome: 14.
OW971733.1:68352043-68352060
TAAATCTTTAAAAAAAAAAGTGACTGGAAG68352043AATATAAGAGCCAGAGGCTGGGGAGTGGCTGTGTGCAGTGCTGCCTTC
Mus musculus genome assembly, chromosome: 3.
OW971743.1:76234663-76234680
AAGGATCACTGTAGAAGAGGGAACAGAACG76234663AATATAAGAGCCAGAGGCAGGGGATGACTACACAGCGTCTTCTCGACA
Mus musculus genome assembly, chromosome: 10.
OW971749.1:79319619-79319636
TTGTGATCATCAAGGAAGAGGAGTAGAAAG79319619AATATAAGAGCCAGAGGCTCAGGATGAAAGCACAAAAAGAGGGCTTTC
Mus musculus genome assembly, chromosome: 14.
OW971755.1:68480781-68480798
TAAATCTTTAAAAAAAAAAGTGACTGGAAG68480781AATATAAGAGCCAGAGGCTGGGGAGTGGCTGTGTGCAGTGCTGCCTTC
Mus musculus musculus genome assembly, chromosome: 3.
OW971764.1:76067045-76067062
AAGGATCACTGTAGAAGAGGGAACAGAACG76067045AATATAAGAGCCAGAGGCAGGGGATGACTACACAGCGTCTTCTGGACA
Mus musculus musculus genome assembly, chromosome: 10.
OW971770.1:78978119-78978136
TTGTGATCATCAAGGAAGAGGAGTAGAAAG78978119AATATAAGAGCCAGAGGCTCAGGATGAAAGCACAAAAAGAGGGCTTTC
Mus musculus musculus genome assembly, chromosome: 14.
OW971776.1:67669532-67669549
TAAATCTTTAAAAAAAAAAGTGACTGGAAG67669532AATATAAGAGCCAGAGGCTGGGGAGTGGCTGTGTGCAGTGCTGCCTTC
Mus musculus genome assembly, chromosome: 3.
OW971785.1:76745764-76745781
AAGGATCACTGTAGAAGAGGGAACAGAACG76745764AATATAAGAGCCAGAGGCAGGGGATGACTACACAGCGTCTTCTCGACA
Mus musculus genome assembly, chromosome: 10.
OW971791.1:79312829-79312846
TTGTGATCATCAAGGAAGAGGAGTAGAAAG79312829AATATAAGAGCCAGAGGCTCAGGATGAAAGCACAAAAAGAGGGCTTTC
Mus musculus genome assembly, chromosome: 14.
OW971796.1:68320472-68320489
TAAATCTTAAAAAAAAATAGTGACTGGAAA68320472AATATAAGAGCCAGAGGCTGGGGAGTGGCTGTGTGCAGTGCTGCCTTC
Ovis canadensis canadensis isolate 43U chromosome 15 sequence.
CP011900.1:29674753-29674770
AAACTGAAGGTCCCTGACAGGTAAAAATTC29674753AATATAAGAGCCAGAGGCCCCTCAGGGAGCTTTSACAGGGCTCCATTT
Erpetoichthys calabaricus genome assembly, chromosome: 1.
LR536432.2:237453547-237453564
GGCCAGCTGTACTGTATCAGTCCTTTTATC237453547AATATAAGAGCCAGAGGCCCCATTCTTCCTGCTTTTACTCTTCATATT
Erpetoichthys calabaricus genome assembly, chromosome: 2.
LR536433.2:218159035-218159052
GACATGCTGTACTATAACAGTCTATTCATC218159035AATATAAGAGCCAGAGGCCACATTGATCTTCGCTGCTGACAATTCCAA
Rutilus rutilus genome assembly, chromosome: 22.
OX637954.1:8405702-8405719
ATCTGCCTCAAACACCTCTTTGAGTTCCTC8405702AATATAAGAGCCAGAGGCCTTGTTTAGCTCACACACAGCAGCGGAGTT
Mus musculus targeted non-conditional, lacZ-tagged mutant allele BC051665:tm1e(KOMP)Wtsi; transgenic.
JN951566.1:38259-38276
AGGGAACGCCATGGAAAAGGAGGCAGAAAG38259AATATAAGAGCCAGAGGCAGGTGGAGAACACCAGGAGAACAAAACCCT
Mus musculus targeted KO-first, conditional ready, lacZ-tagged mutant allele BC051665:tm1a(KOMP)Wtsi; transgenic.
JN962785.1:38284-38301
AGGGAACGCCATGGAAAAGGAGGCAGAAAG38284AATATAAGAGCCAGAGGCAGGTGGAGAACACCAGGAGAACAAAACCCT
TSA: Lytechinus variegatus isotig13605.Lvarbgast mRNA sequence.
JI426580.1:314-331
GTGTGTCATTTTACAACAATTCTGTCAATG314AATATAAGAGCCAGAGGCACAGATAGATAATTAATGTTACAGTGGAAA
2M0250D04F Mouse 10kb plasmid UUGC2M library Mus musculus genomic clone UUGC2M0250D04 F, genomic survey sequence.
AZ975066.1:474-491
TGCAGTTGAGGGGGTGGAAACAATATAAGA474AATATAAGAGCCAGAGGCAGTGGTTGACTACAAACAAACAGTGTCTTC
Rattus norvegicus clone CH230-115A4, WORKING DRAFT SEQUENCE, 5 unordered pieces.
AC133446.3:126088-126105
GGCTCAGGGATTATTGAAGTGGGTGGAAAT126088AATATAAGAGCCAGAGGCAATGGATGATCACAGGGAACATTACCTTCT
Mus musculus chromosome 13 clone RP24-167G24 map 13, WORKING DRAFT SEQUENCE, 13 unordered pieces.
AC138590.4:26383-26400
AGGGAACGCCATGGAAAAGGAGGCAGAAAG26383AATATAAGAGCCAGAGGCAGGTGGAGAACACCAGGAGAACAAAACCCT
Mus musculus chromosome UNK clone RP23-302F8, WORKING DRAFT SEQUENCE, 15 unordered pieces.
AC139577.3:207277-207294
CAGGGAACATTGTGGAAGAGAAACAGGGAG207277AATATAAGAGCCAGAGGCTAGAGTGAGTGCTGAAAAATACTGTCATCT
Malus hybrid cultivar cultivar Royalty chromosome 7.
CP141959.1:26276852-26276869
TTCTCACTTTCTCTCATAAAAAGTCTAAGC26276852AATATAAGAGCCAGAGGCGTGAGTGTGCGTGCTGTGTGTGTGTGTGAG
Malus hybrid cultivar cultivar Royalty chromosome 7.
CP141976.1:25200977-25200994
TTCTCACTTTCTCTCATAAAAAGTCTAAGC25200977AATATAAGAGCCAGAGGCGTGAGTGTGCGTGCGTGCTCTGTGTGTGTG
Malus hybrid cultivar cultivar SH6 chromosome 7.
CP143364.1:24797506-24797523
TTCTCACTTTCTCTCATAAAAAGTCTAAGC24797506AATATAAGAGCCAGAGGCGTGAGTGTGCGTGCGTGCTCTGTGTGTGTG
Malus hybrid cultivar cultivar SH6 chromosome 7.
CP143381.1:24072814-24072831
TTCTCACTTTCTCTCATAAAAAGTCTAAGC24072814AATATAAGAGCCAGAGGCGTGAGTGTGCGTGCGTGCTCTCTGTGTGTG
Malus sylvestris genome assembly, chromosome: 7.
OU696509.1:25244663-25244680
TTCTCACTTTCTCTCATAAAAAGTCTAAGC25244663AATATAAGAGCCAGAGGCGTGAGTGTGCGTGCGTGCTCTGTGTGTGTG
Malus domestica genome assembly, chromosome: 7.
OU696683.1:24526650-24526667
TTCTCACTTTCTCTCATAAAAAGTCTAAGC24526650AATATAAGAGCCAGAGGCGTGAGTGTGCGTGCGTGCTCTGTGTGTGTG
Malus domestica genome assembly, chromosome: 7.
OU744548.1:25714991-25715008
TTCTCACTTTCTCTCATAAAAAGTCTAAGC25714991AATATAAGAGCCAGAGGCGTGAGTGTGCGTGCGTGCTCTGTGTGTGTG
Malus domestica genome assembly, chromosome: 7.
OU744959.1:24508311-24508328
TTCTCACTTTCTCTCATAAAAAGTCTAAGC24508311AATATAAGAGCCAGAGGCGTGAGCGTGCGTGCGTGCTCTGTGTGTGTG
Malus domestica genome assembly, chromosome: 7.
OU744997.1:24816730-24816747
TTCTCACTTTCTCTCATAAAAAGTCTAAGC24816730AATATAAGAGCCAGAGGCGTGAGTGTGCGTGCGTGCTCTGTGTGTGTG
Crataegus laevigata genome assembly, chromosome: 10.
OY756947.1:27750225-27750242
TTCTCACTTTCTCTCATAAATTGTCTAAGC27750225AATATAAGAGCCAGAGGCATGAGTGTGCGTGCGTGCGTGTGTATGTGC
Pyrus communis genome assembly, chromosome: 5.
OY757072.1:21494741-21494758
TTCTCACTTTCTCTCAGAAAAAGTCTAAGC21494741AATATAAGAGCCAGAGGCGTGAGTTTGCGTGTGTGCATGTGTGTGTGT
Rhagonycha fulva genome assembly, chromosome: 6.
HG996559.1:29272688-29272705
ACGACTAATCAGGCTGGTCTTTTATTATTT29272688AATATAAGAGCCAGAGGCGTCGTTTCAAATTCAAAAATTTAAATTAAA
Amaurobius ferox genome assembly, chromosome: 5.
OX578138.1:88436235-88436252
CATTCTCTTTCTTTAATCTTTGAGGATTTC88436235AATATAAGAGCCAGAGGCACGGAGGTGCTACTTATTTAAGGACCAGCG
Antedon bifida genome assembly, chromosome: 1.
OY727093.1:12225172-12225189
GGTTAATAAAGTAAATCAATCAATCAATAA12225172AATATAAGAGCCAGAGGCCTATGTACTGTATGTCTGAAATAAAATCCA
Cepaea hortensis genome assembly, chromosome: 11.
OY992886.1:81955437-81955454
GGACAGGGTAGTAAGTCAGCTGGGACAGGA81955437AATATAAGAGCCAGAGGCAAGGCTGGACCGAGCAGTCGCAAAGCAAAG

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