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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:03:33, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

AUAC-aaa23b12.b1 Ascaris suum whole genome shotgun library (PMAJ_4 GSS) Ascaris suum genomic, genomic survey sequence.
ED038859.1:408-427
CTTCACTAATGATCCATTCAGCCACTTTCA408AATATTGATGAAGAACGAAAACGACTTCAACTGAGGCAAACTTTCATCGT
AUAC-aae21a07.g1 Ascaris suum whole genome shotgun library (PMAJ_4 GSS) Ascaris suum genomic, genomic survey sequence.
ED112353.1:525-544
CTTCACTAATGATCCATTCAGCCACTTTCA525AATATTGATGAAGAACGAAAACGACTTCAACTGAGGCAAACTTTCATCGT
Salicornia ramosissima genome assembly, chromosome: 7.
OX596238.1:26799331-26799350
ACAGGAGCCGCTGCTCAAATTGACCCACCC26799331AATATTGATGAAGAACGAAAGGCTTTGGCTGCTAGAGCTGCTGCTGCTGC
Calamotropha paludella genome assembly, chromosome: 11.
OV656814.1:17294385-17294404
TTTTTGCTGGTTAGACGTCTTATGATTAAT17294385AATATTGATGAAGAACGAAACATTACAGTTTAATATTTGTTACTTTAGTA
Leptodirus hochenwarti genome assembly, chromosome: 3.
OX371178.1:45810266-45810285
TAAAATTGATTTACAAATTACAAATTAGAA45810266AATATTGATGAAGAACGAAATATTGTATGTATATGAGGCGTGGGCATATT
Leptodirus hochenwarti genome assembly, chromosome: 3.
OX371178.1:45810773-45810792
TAAAATTGATTTACAAATTACAAATTAGAA45810773AATATTGATGAAGAACGAAATATTGTATGTATATGAGGCGTGGGCATATT
Leptodirus hochenwarti genome assembly, chromosome: 3.
OX371178.1:45811111-45811130
TAAAATTGATTTACAAATTACAAATTAGAA45811111AATATTGATGAAGAACGAAATATTGTATGTATATGAGGCGTGGGCATATT
Pterostichus niger genome assembly, chromosome: 9.
OX380342.1:31675627-31675646
GTTTCCAGTTTCAGCTTAAATTAAAACCAG31675627AATATTGATGAAGAACGAAATAATTTAATTTTCTTGGAATCTTGTCATGA
Parasteatoda lunata genome assembly, chromosome: 4.
OX421973.1:50014451-50014470
CCATGATATTATGGGTTTGTGTCAAAAAAA50014451AATATTGATGAAGAACGAAAATAAATATTATTTTTTAGGGTTATAAGTAA
Tipula vernalis genome assembly, chromosome: 1.
OY282558.1:303833820-303833839
TTGTCAAACCATAAATGTATTTCTATATAT303833820AATATTGATGAAGAACGAAACTATTTCTATTCAATAGACTTTCCCTATAT
Pyrrhia umbra genome assembly, chromosome: 25.
OY982942.1:3897657-3897676
TGACACAAGATTTTGTCATTTGAATATTTG3897657AATATTGATGAAGAACGAAACAGCACTTGTGGTTTGTTTTTCATTTCACT
Viscum album genome assembly, chromosome: 10_4.
OY728166.1:294374230-294374249
ATTTTAATTCCAATCCCACTTTTAATTCCA294374230TTTCGTTCTTCATCAATATTTTATAATCAATCCACTATGTTTAGTGGTTT
Bacillus sp. B25(2016b) genome.
CP016285.1:2685394-2685413
TTTAACTTTTCCTTAACCGCATCATAAAAT2685394TTTCGTTCTTCATCAATATTTAAGTAAACACGACTTACTGTTTTAGAAAA
Agapetus fuscipes genome assembly, chromosome: 17.
OX637349.1:10359081-10359100
TTATTCTTCTCGGCATTTTGACGAAGAAAT10359081TTTCGTTCTTCATCAATATTTCGTCTTAATCTTAGGTTTTGTAATGCCCT
Endomychus coccineus genome assembly, chromosome: 1.
OY294067.1:152615401-152615420
TGCACTGATATATCTTGTAAAGTTTGTATC152615401TTTCGTTCTTCATCAATATTTTGTGCAGGAGACAAAGCTCTATTGCAGAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AATATTGATGAAGAACGAAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AATATTGATGAAGAACGAAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.204 | 0.195 | search_plus_done; http://172.18.8.135:50400/match?q=AATATTGATGAAGAACGAAA&k=0&no_gap=0&offset=0&limit=50
0.311 | 0.107 | search_minus_done; http://172.18.8.135:50400/match?q=TTTCGTTCTTCATCAATATT&k=0&no_gap=0&offset=0&limit=39
0.314 | 0.003 | cgi_end;

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