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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-12-15 14:21:03, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Solanum tuberosum cultivar RH89-039-16 chromosome 5 clone RH089B22, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.
AC238162.1:13360-13383
CTGCAGCTGGATAGTCAACGCTATCACTGG13360AATCATAATCACGACTCATTGTCCTTATAAACTGTTTGTGCAACCAGCTAGGTA
Solanum tuberosum cultivar RH89-039-16 chromosome 5 clone RH201A02, *** SEQUENCING IN PROGRESS ***, 17 unordered pieces.
AC238408.1:98511-98534
CCGCAGCTGGATAGTCAACGCTATCACTGG98511AATCATAATCACGACTCATTGTCCTTATAAACTGTTTGTGCAACCAGCTAGGTA
Solanum tuberosum cultivar P8 chromosome 5.
CP046690.1:323850-323873
CCGCAGCTGGRTAGTCAACGCTATCACTGG323850AATCATAATCACGACTCATTGTCCTTATAAACTGTYTGTGCAACCAGCTAGGTA
Solanum tuberosum cultivar MSH/14-112 chromosome 5.
CP046698.1:323860-323883
CCGCAGCTGGRTAGTCAACGCTATCACTGG323860AATCATAATCACGACTCATTGTCCTTATAAACTGTYTGTGCAACCAGCTAGGTA
Solanum pinnatisectum cultivar CGN17745 chromosome 5.
CP047565.1:323702-323725
CCGCAGCTGGGTAGTCAACGCTATCACTGG323702AATCATAATCACGACTCATTGTCCTTATAAACTGTCTGTGCAACCAGCTAGGTA
Solanum tuberosum cultivar Solyntus chromosome 5.
CP055238.1:471794-471817
CCGCAGCGGGATAGTCAACGCTATCACTGG471794AATCATAATCACGACTCATTGTCCTTATAAACTGTTTGTGCAACCAGCTAGGTA
Solanum verrucosum cultivar 11H23 chromosome 5.
CP133616.1:367249-367272
CCGCAGCTGGATAGTCAACGCTATCACTGG367249AATCATAATCACGACTCATTGTCCTTATAAACTGTTTGTGCAACCAGCTAGGTA
EST466111 tomato crown gall Solanum lycopersicum cDNA clone cTOE11B10 5' sequence, mRNA sequence.
BG133219.1:208-231
TACCTAGCTGGTTGCACAGACAGTTTCCAA208GGACAATGAGTCGTGATTATGATTCCAGTGATAGCATTGATTATCCAGCTGCGG
POTJV11TR Solanum tuberosum RHPOTKEY BAC ends Solanum tuberosum genomic clone RHPOTKEY089_B22, genomic survey sequence.
ER854980.1:321-344
TACCTAGCTGGTTGCACAAACAGTTTATAA321GGACAATGAGTCGTGATTATGATTCCAGTGATAGCGTTGACTATCCAGCTGCAG
Solanum tuberosum cultivar RH89-039-16 chromosome 5 clone RH025C18, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces.
AC237965.1:120676-120699
TACCTAGCTGGTTGCACAAACAGTTTATAA120676GGACAATGAGTCGTGATTATGATTCCAGTGATAGCGTTGACTATCCAGCTGCGG
Solanum lycopersicum cv. Heinz 1706, chromosome 5 BAC clone C05HBa0193P17, complete sequence.
AC232704.1:44917-44940
TACCTAGCTGGTTGCACAGACAGTTTCCAA44917GGACAATGAGTCGTGATTATGATTCCAGTGATAGCATTGATTATCCAGCTGCGG
Solanum tuberosum DNA for genomic PstI fragment from 3'end, clone GP186.
AJ492240.1:221-244
TACCTAGCTGGTTGCACAAACAGTTTATAA221GGACAATGAGTCGTGATTATGATTCCAGTGATAGCGTTGACTATCCAGCTGCGG
Solanum lycopersicum Micro-Tom DNA, chromosome 5, draft genome sequence.
AP028939.1:6125293-6125316
TACCTAGCTGGTTGCACAGACAGTTTACTA6125293GGACAATGAGTCGTGATTATGATTCCAGTGATAGCATTGATTATCCAGCTGCGG
Solanum lycopersicum cultivar I-3 chromosome 5.
CP023761.1:5786533-5786556
TACCTAGCTGGTTGCACAGACAGTTTCCAA5786533GGACAATGAGTCGTGATTATGATTCCAGTGATAGCATTGATTATCCAGCTGCGG
Solanum pennellii chromosome ch05, complete genome.
HG975444.1:6333539-6333562
TACCTAGCTGGTTGCACAGACCGTTTATAA6333539GGACAATGAGTCGTGATTATGATTCCAGTGATAGCATTGATTATCCAGCTGCGG
Solanum lycopersicum chromosome ch05, complete genome.
HG975517.1:5786482-5786505
TACCTAGCTGGTTGCACAGACAGTTTCCAA5786482GGACAATGAGTCGTGATTATGATTCCAGTGATAGCATTGATTATCCAGCTGCGG
Solanum lycopersicum genome assembly, chromosome: 5.
OU640348.1:7010927-7010950
TACCTAGCTGGTTGCACAGACAGTTTCCAA7010927GGACAATGAGTCGTGATTATGATTCCAGTGATAGCATTGATTATCCAGCTGCGG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AATCATAATCACGACTCATTGTCC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AATCATAATCACGACTCATTGTCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.405 | 0.396 | search_plus_done; http://172.18.8.135:50800/match?q=AATCATAATCACGACTCATTGTCC&k=0&no_gap=0&offset=0&limit=50
0.639 | 0.234 | search_minus_done; http://172.18.8.135:50800/match?q=GGACAATGAGTCGTGATTATGATT&k=0&no_gap=0&offset=0&limit=43
0.646 | 0.007 | cgi_end;

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