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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 07:17:03, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Flame chromosome 15.
CP141924.1:36188263-36188284
TCTGAAAATCGGAGACATTGTCGTCCATGC36188263AATCCCAATGACTCACCATCTCGTGCAGCTTATAAGCGACGGTGGAAGGATA
Malus hybrid cultivar cultivar Flame chromosome 15.
CP141941.1:39440948-39440969
TCTGAAAATCGGAGACATTGTCGTCCATGC39440948AATCCCAATGACTCACCATCTCGTGCAGCTTATAAGCGACGGTGGAAGGATA
Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141967.1:35429851-35429872
TCTGAAAATCGGAGACATTGTCGTCCATGC35429851AATCCCAATGACTCACCATCTCGTGCAGCTTATAAGCGACGGTGGAAGGATA
Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141984.1:36512930-36512951
TCTGAAAATCGGAGACATTGTCGTCCATGC36512930AATCCCAATGACTCACCATCTCGTGCAGCTTATAAGCGACGGTGGAAGGATA
Malus x robusta genome assembly, chromosome: 1.
OY720325.1:35865189-35865210
TCTGAAAATCGGAGACATTGTCGTCCATGC35865189AATCCCAATGACTCACCATCTCGTGCAGCTTATAAGCGACGGTGGAAGGATA
Crataegus laevigata genome assembly, chromosome: 7.
OY756944.1:22683650-22683671
TCTGAAAATCGGAGACCTCGTCGTCCATGC22683650AATCCCAATGACTCACCATCTCGTACAGCTTATAAGCGACGGTGGAAGGATA
020730AVBC009212HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC009212, mRNA sequence.
EB130998.1:557-578
TATCCTTCCACCGTCGCTTATAAGCTGCAC557GAGATGGTGAGTCATTGGGATTGCATGG
010604AAXA005537HT (AAXA) Royal Gala 126 DAFB fruit core Malus domestica cDNA clone AAXA005537, mRNA sequence.
EB136171.1:534-555
TATCCTTCCACCGTCGCTTATAAGCTGCAC534GAGATGGTGAGTCATTGGGATTGCATGGACGACAATGTCTCCGATTTTCAGA
010604AAXA005592HT (AAXA) Royal Gala 126 DAFB fruit core Malus domestica cDNA clone AAXA005592, mRNA sequence.
EB136197.1:534-555
TATCCTTCCACCGTCGCTTATAAGCTGCAC534GAGATGGTGAGTCATTGGGATTGCATGGACGACAATGTCTCCGATTTT
Mdfrfu3513C01.g1 Apple_EST_Mdfrfu Malus domestica cDNA 5' similar to ref|NP_201358.1| UDP-glycosyltransferase family [Arabidopsis thaliana], mRNA sequence.
GO535583.1:157-178
TATCCTTCCACCGTCGCTTATAAGCTGCAC157GAGATGGTGAGTCATTGGGATTGCATGGACGACAATGTCTCCGATTTTCAGA
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141936.1:18756195-18756216
TATCCTTCCACCGTCGCTTATAAGCTGCAC18756195GAGATGGTGAGTCATTGGGATTGCATGGACGACAATGTCTCCGATTTTCAGA
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143367.1:19069203-19069224
TATCCTTCCACCGTCGCTTATAAGCTGCAC19069203GAGATGGTGAGTCATTGGGATTGCATGGACGACAATGTCTCCGATTTTCAGA
Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143372.1:16879845-16879866
TATCCTTCCACCGTCGCTTATAAGCTGCAC16879845GAGATGGTGAGTCATTGGGATTGCATGGACGACAATGTCTCCGATTTTCAGA
Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143389.1:15239045-15239066
TATCCTTCCACAGTCGCTTATAAGCTGCAC15239045GAGATGGTGAGTCATTGGGATTGCATGGACGACGATGTCTCCGATTTTCAGA
Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143389.1:15242161-15242182
TATCCTTCCACCGTCGCTTATAAGCTGCAC15242161GAGATGGTGAGTCATTGGGATTGCATGGACGACGAGGTCTCCGATTTTCAGA
Malus sylvestris genome assembly, chromosome: 10.
OU696512.1:18504098-18504119
TATCCTTCCACCGTCGCTTATAAGCTGCAC18504098GAGATGGTGAGTCATTGGGATTGCATGGACGACAATGTCTCCGATTTTCAGA
Malus sylvestris genome assembly, chromosome: 15.
OU696517.1:16717789-16717810
TATCCTTCCACCGTCGCTTATAAGCTGCAC16717789GAGATGGTGAGTCATTGGGATTGCATGGACGACAATGTCTCCGATTTTCAGA
Malus domestica genome assembly, chromosome: 10.
OU696686.1:18715524-18715545
TATCCTTCCACCGTCGCTTATAAGCTGCAC18715524GAGATGGTGAGTCATTGGGATTGCATGGACGACAATGTCTCCGATTTTCAGA
Malus domestica genome assembly, chromosome: 15.
OU696691.1:16985837-16985858
TATCCTTCCACCGTCGCTTATAAGCTGCAC16985837GAGATGGTGAGTCATTGGGATTGCATGGACGACAATGTCTCCGATTTTCAGA
Malus domestica genome assembly, chromosome: 10.
OU744551.1:18724836-18724857
TATCCTTCCACCGTCGCTTATAAGCTGCAC18724836GAGATGGTGAGTCATTGGGATTGCATGGACGACAATGTCTCCGATTTTCAGA
Malus domestica genome assembly, chromosome: 15.
OU744556.1:16935599-16935620
TATCCTTCCACCGTCGCTTATAAGCTGCAC16935599GAGATGGTGAGTCATTGGGATTGCATGGACGACAATGTCTCCGATTTTCAGA
Malus domestica genome assembly, chromosome: 10.
OU744962.1:19264123-19264144
TATCCTTCCACCGTCGCTTATAAGCTGCAC19264123GAGATGGTGAGTCATTGGGATTGCATGGACGACAATGTCTCCGATTTTCAGA
Malus domestica genome assembly, chromosome: 15.
OU744967.1:16922079-16922100
TATCCTTCCACCGTCGCTTATAAGCTGCAC16922079GAGATGGTGAGTCATTGGGATTGCATGGACGACAATGTCTCCGATTTTCAGA
Malus domestica genome assembly, chromosome: 10.
OU745000.1:18311403-18311424
TATCCTTCCACCGTCGCTTATAAGCTGCAC18311403GAGATGGTGAGTCATTGGGATTGCATGGACGACAATGTCTCCGATTTTCAGA
Malus domestica genome assembly, chromosome: 15.
OU745005.1:16844875-16844896
TATCCTTCCACCGTCGCTTATAAGCTGCAC16844875GAGATGGTGAGTCATTGGGATTGCATGGACGACAATGTCTCCGATTTTCAGA
Pyrus communis genome assembly, chromosome: 1.
OY757068.1:13585153-13585174
TATCCTTCCACCGTCGCTTATAAGCTGCAC13585153GAGATGGTGAGTCATTGGGATTGCATGGACGACGAGGTCTCCGATTTTCGGA
Pyrus communis genome assembly, chromosome: 1.
OY757068.1:13587975-13587996
TATCCTTCCACCGTCGCTTATAAGCTGCAC13587975GAGATGGTGAGTCATTGGGATTGCATGGACGACGAGGTCTCCGATTTTCAGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AATCCCAATGACTCACCATCTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AATCCCAATGACTCACCATCTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.320 | 0.311 | search_plus_done; http://172.18.8.135:50400/match?q=AATCCCAATGACTCACCATCTC&k=0&no_gap=0&offset=0&limit=50
0.677 | 0.357 | search_minus_done; http://172.18.8.135:50400/match?q=GAGATGGTGAGTCATTGGGATT&k=0&no_gap=0&offset=0&limit=44
0.691 | 0.014 | cgi_end;

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