GGGenome | Results

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2025-04-12 16:14:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

NF046C10IN1F1072 Insect herbivory Medicago truncatula cDNA clone NF046C10IN 5', mRNA sequence.
BG449247.1:465-490

CGCTGTTCTTATTCCTAAACACGCGCGTAA465AATCGACGATGATCTTTACCGCGCCGTTGATATCTATCTCAAGGTTCATCCAAAGC

NF052B05PL1F1042 Phosphate starved leaf Medicago truncatula cDNA clone NF052B05PL 5', mRNA sequence.
BG458092.1:445-470

CGCTGTTCTTATTCCTAAACACGCGCGTAA445AATCGACGATGATCTTTACCGCGCCGTTGATATCTATCTCAAGGTTCATCCAAAGC

Medicago--03-G08.b1 Subtracted medicago cDNA library specific for UV-B irradiation Medicago truncatula cDNA clone Medicago--03-G08, mRNA sequence.
DY633109.1:86-111

CGCTGTTCTTATTCCTAAACACGCGCGTAA86AATCGACGATGATCTTTACCGCGCCGTTGATATCTATCTCAAGGTTCATCCAAAGC

Medicago--03-A14.b1 Subtracted medicago cDNA library specific for UV-B irradiation Medicago truncatula cDNA clone Medicago--03-A14, mRNA sequence.
DY633147.1:86-111

CGCTGTTCTTATTCCTAAACACGCGCGTAA86AATCGACGATGATCTTTACCGCGCCGTTGATATCTATCTCAAGGTTCATCCAAAGC

193 Alfalfa SSH cDNA library induced by salt stress Medicago sativa cDNA, mRNA sequence.
FE896913.1:65-90

CGCTGTTCTTATTCCTAAACACGCGCGTAA65AATCGACGATGATCTTTACCGCGCCGTTGATATCTATCTCAAGGTTCATCCGAAGC

TSA: Medicago sativa subsp. falcata cultivar Wisfal FZ0_11157 mRNA sequence.
JL892332.1:347-372

CGCTGTTCTTATTCCTAAACACGCGCGTAA347AATCGACGATGATCTTTACCGCGCCGTTGATATCTATCTCAAGGTTCATCCAAAGC

Medicago truncatula clone MTYFL_FM_FN_FO1G-N-19 unknown mRNA.
BT053082.1:845-870

CGCTGTTCTTATTCCTAAACACGCGCGTAA845AATCGACGATGATCTTTACCGCGCCGTTGATATCTATCTCAAGGTTCATCCAAAGC

Medicago truncatula clone JCVI-FLMt-22M18 unknown mRNA.
BT145782.1:1279-1304

CGCTGTTCTTATTCCTAAACACGCGCGTAA1279AATCGACGATGATCTTTACCGCGCCGTTGATATCTATCTCAAGGTTCATCCAAAGC

M.truncatula DNA sequence from clone MTH2-97H11 on chromosome 3.
CU468280.5:4878-4903

CGCTGTTCTTATTCCTAAACACGCGCGTAA4878AATCGACGATGATCTTTACCGCGCCGTTGATATCTATCTCAAGGTAAAAACAAAAA

Medicago lupulina genome assembly, chromosome: 6.
OY283144.1:24611431-24611456

CGCTGTTCTTATTCCTAAACACGCACGTAA24611431AATCGACGATGATCTTTACCGCGCCGTTGATATCTATCTCAAGGTAAGAACAAAAA

Medicago--03-G08.g1 Subtracted medicago cDNA library specific for UV-B irradiation Medicago truncatula cDNA clone Medicago--03-G08, mRNA sequence.
DY633229.1:143-168

CTTTGGATGATATTTTGAGATAGATATCAA143CGGCGCGGTAAAGATCATCGTCGATTTTACGCGCGTGTTTAGGAATAAGAACAGCG

Medicago--03-A14.g1 Subtracted medicago cDNA library specific for UV-B irradiation Medicago truncatula cDNA clone Medicago--03-A14, mRNA sequence.
DY633264.1:147-172

CTTTGGATGAACCTTGTATTTAGATATCAA147CGGCGCGGTAAAGATCATCGTCGATTTTACGCGCGTGTTTAGGAATAAGAACAGCG

Medicago truncatula clone mth2-151m16, complete sequence.
AC147002.20:20046-20071

TTTTTGTTTTTACCTTGAGATAGATATCAA20046CGGCGCGGTAAAGATCATCGTCGATTTTACGCGCGTGTTTAGGAATAAGAACAGCG

Medicago arabica genome assembly, chromosome: 4.
OX326967.1:36679238-36679263

TTTTTGTTTTTACCTTGAGATAGATATCAA36679238CGGCGCGGTAAAGATCATCGTCGATTTTACGTGCGTGTTTAGGAATAAGAACAGCG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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Debug Info:

0.009 | 0.009 | search_start;
0.391 | 0.382 | search_plus_done; http://172.18.8.135:50400/match?q=AATCGACGATGATCTTTACCGCGCCG&k=0&no_gap=0&offset=0&limit=50
0.536 | 0.145 | search_minus_done; http://172.18.8.135:50400/match?q=CGGCGCGGTAAAGATCATCGTCGATT&k=0&no_gap=0&offset=0&limit=40
0.539 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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