GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 22:06:42, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:35672392-35672411
AGAGGATTAGGGTTTTGGAGACAAGATTTG35672392AATCGGAAAGGGCAGCCTAGGGTTTTAGGGAGACAACGTTTATGTTCACG
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_10757.
FX700695.1:27-46
AACATAAACGTTGTCTCCCTAAAACC27CTAGGCTGCCCTTTCCGATTCAAATCTTGTCTCCAAAACCCTAATCCTCT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB022C05, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.
AC189265.2:7218-7237
CGTGAACATAAACGTTGTCTCCCTAAAACC7218CTAGGCTGCCCTTTCCGATTCAAATCTTGTCTCCAAAACCCTAATCCTCT
Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 882 unordered pieces.
FJ789639.1:2731290-2731309
CGTGAACATAAACGTTGTCTCCCTAAAACC2731290CTAGGCTGCCCTTTCCGATTCAAATCTTGTCTCCAAAACCCTAATCCTCT
Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 66 unordered pieces.
FJ789649.1:579019-579038
CGTGAACATAAACGTTGTCTCCCTAAAACC579019CTAGGCTGCCCTTTCCGATTCAAATCTTGTCTCCAAAACCCTAATCCNNN
Brassica napus genome assembly, chromosome: A07.
HG994361.1:697509-697528
CGTGAACATAAACGTTGTCTCCCTAAAACC697509CTAGGCTGCCCTTTCCGATTCAAATCTTGTCTCCAAAACCCTAATCCTCT
Brassica rapa genome, scaffold: A07.
LR031574.1:759429-759448
CGTGAACATAAACGTTGTCTCCCTAAAACC759429CTAGGCTGCCCTTTCCGATTCAAATCTTGTCTCCAAAACCCTAATCCTCT
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:761516-761535
CGTGAACATAAACGTTGTCTCCCTAAAACC761516CTAGGCTGCCCTTTCCGATTCAAATCTTGTCTCCAAAACCCTAATCCTCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AATCGGAAAGGGCAGCCTAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AATCGGAAAGGGCAGCCTAG | format : html | download : | debug : 

0.010 | 0.010 | search_start;
0.141 | 0.131 | search_plus_done; http://172.18.8.135:50400/match?q=AATCGGAAAGGGCAGCCTAG&k=0&no_gap=0&offset=0&limit=50
0.183 | 0.041 | search_minus_done; http://172.18.8.135:50400/match?q=CTAGGCTGCCCTTTCCGATT&k=0&no_gap=0&offset=0&limit=49
0.188 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).