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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 05:00:16, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

gd33h11.y1 Moss EST library PPS Physcomitrella patens cDNA clone PEP_SOURCE_ID:PPS91522 5', mRNA sequence.
BQ041117.1:172-193
ATGTTGAAGTACATCCCGTGGTATCATGCC172AATCGGATGCTCAGCTTCTACGCGCCCGGATGGAGCGGGGAGGTGCGGAGCA
Physcomitrella patens cDNA, clone:ppgs40n05, 5' end.
DC943169.1:365-386
ATGTTGAAGTACATCCCGTGGTATCATGCC365AATCGGATGCTCAGCTTCTACGCGCCCGGATGGAGCGGGGAGGTGCGGAGCA
40JKME7D_UP_006_B09_26MAR2004_077 40JKME7D Brassica napus cDNA 5', mRNA sequence.
DY012430.1:421-442
TCTTCTGGTTTCATCCCTTGGTTCCATGCT421AATCGGATGCTCAGCTTCTACGCACCTGGTTGGTGTGGGGAGGTTCGTGACG
BNBS8DCT_UP_006_E02_15APR2005_008 Brassica napus seeds BNBS8DCT Brassica napus cDNA 5', mRNA sequence.
EE458912.1:518-539
TCTTCTGGTTTCATCCCTTGGTTCCATGCT518AATCGGATGCTCAGCTTCTACGCACCTGGTTGGTGTGGGGAGGTTCGTGACG
25RDBNM_UP_051_B09_02NOV2005_077 Brassica napus 25RDBNM Brassica napus cDNA 5', mRNA sequence.
EE511574.1:421-442
TCTTCTGGTTTCATCCCTTGGTTCCATGCT421AATCGGATGCTCAGCTTCTACGCACCTGGTTGGTGTGGGGAGGTTCGTGACG
0211379 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV145445.1:455-476
TCTTCTGGTTTCATCCCTTGGTTCCATGCT455AATCGGATGCTCAGCTTCTACGCACCTGGTTGGTGTGGGGAGGTTCGTGACG
BR039491 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-142A10 5', mRNA sequence.
EX054847.1:434-455
TCTTCTGGTTTCATCCCTTGGTTCCATGCT434AATCGGATGCTCAGCTTCTACGCACCTGGTTGGTGTGGGGA
BR114875 root cDNA library KHRT Brassica rapa subsp. pekinensis cDNA clone KHRT-09D05 5', mRNA sequence.
EX131045.1:312-333
TCTTCTGGTTTCATCCCTTGGTTCCATGCT312AATCGGATGCTCAGCTTCTACGCACCTGGTTGGTGTGGGGAGGTTCGTGACG
RR3BY02TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EX762968.1:392-413
TCCTCTGGTTTCATCCCTTGGTTTCATGCA392AATCGGATGCTCAGCTTCTACGCACCTGGTTGGTGTGGGGAGGTTCGTGACG
RR3BY58TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EX763021.1:509-530
TCCTCTGGTTTCACCCCTTGGTTTCATGCA509AATCGGATGCTCAGCTTCTACGCACCTGGTTGGTGTGGGGAGGTTCGTGACG
RS2CQ73TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EX897120.1:474-495
TCCTCTGGTTTCATCCCTTGGTTTCATGCA474AATCGGATGCTCAGCTTCTACGCACCTGGTTGGTGTGGGGAGGTTCGTGACG
RR3E156TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EY916062.1:376-397
TCCTCTGGTTTCATCCCTTGGTTTCATGCA376AATCGGATGCTCAGCTTCTACGCACCTGGTTGGTGTGGGGAGGTTCGTGACG
RR4D179TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EY921225.1:409-430
TCCTCTGGTTTCATCCCTTGGTTTCATGCA409AATCGGATGCTCAGCTTCTACGCACCTGGTTGGTGTGGGGAGGTTCGTGACG
RR4DG25TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EY922508.1:409-430
TCCTCTGGTTTCATCCCTTGGTTTCATGCA409AATCGGATGCTCAGCTTCTACGCACCTGGTTGGTGTGGGGAGGTTCGTGACG
CAYZ11009.fwd CAYZ Physcomitrella patens subsp. patens Villersexel - regular (L) Physcomitrella patens cDNA clone CAYZ11009 5', mRNA sequence.
FC377097.1:180-201
ATGTTGAAGTACATCCCGTGGTATCATGCC180AATCGGATGCTCAGCTTCTACGCGCCCGGATGGAGCGGGGAGGTGCGGAGCA
CAYZ19155.fwd CAYZ Physcomitrella patens subsp. patens Villersexel - regular (L) Physcomitrella patens cDNA clone CAYZ19155 5', mRNA sequence.
FC392612.1:182-203
ATGTTGAAGTACATCCCGTGGTATCATGCC182AATCGGATGCTCAGCTTCTACGCGCCCGGATGGAGCGGGGAGGTGCGGAGCA
CBAW1833.fwd CBAW Physcomitrella patens subsp. patens Gransden - dessicated (H) Physcomitrella patens cDNA clone CBAW1833 5', mRNA sequence.
FC431739.1:182-203
ATGTTGAAGTACATCCCGTGGTATCATGCC182AATCGGATGCTCAGCTTCTACGCGCCCGGATGGAGCGGGGAGGTGCGGAGCA
CBAX6733.fwd CBAX Physcomitrella patens subsp. patens Gransden - dessicated (L) Physcomitrella patens cDNA clone CBAX6733 5', mRNA sequence.
FC451512.1:152-173
ATGTTGAAGTACATCCCGTGGTATCATGCC152AATCGGATGCTCAGCTTCTACGCGCCCGGATGGAGCGGGGAGGTGCGGAGCA
RR2ET08TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD541081.1:392-413
TCCTCTGGTTTCATCCCTTGGTTTCATGCA392AATCGGATGCTCAGCTTCTACGCACCTGGTTGGTGTGGGGAGGTTCGTGACG
RR2F146TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD541799.1:433-454
TCCTCTGGTTTCATCCCTTGGTTTCATGCA433AATCGGATGCTCAGCTTCTACGCACCTGGTTGGTGTGGGGAGGTTCGTGACG
RR3FD71TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD550903.1:382-403
TCCTCTGGTTTCATCCCTTGGTTTCATGCA382AATCGGATGCTCAGCTTCTACGCACCTGGTTGGTGTGGGGAGGTTCGTGACG
RR4GK49TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
FD988217.1:446-467
TCCTCTGGTTTCATCCCTTGGTTTCATGCA446AATCGGATGCTCAGCTTCTACGCACCTGGTTGGTGTGGGGAGGTTCGTGACG
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_874.
FX698224.1:508-529
TCTTCTGGTTTCATCCCTTGGTTCCATGCT508AATCGGATGCTCAGCTTCTACGCACCTGGTTGGTGTGGGGAGGTTCGTGACG
TSA: Pachycladon fastigiatum 75198_870_31069_7_41.Pafaleaf mRNA sequence.
JR025929.1:425-446
TCTTCTGGCTTCATCCCTTGGTACCATGCA425AATCGGATGCTCAGCTTCTACGCTCCTGGTTGGTGTGGGGAAGTTCGAGATG
Brassica napus genome assembly, chromosome: A06.
HG994360.1:39959255-39959276
TCTTGGAGTTGTGTTTGTAGGTTCCATGCT39959255AATCGGATGCTCAGCTTCTACGCACCTGGTCTGTACCGAACGTTGCATCTTG
Brassica rapa genome, scaffold: A06.
LR031569.1:50041678-50041699
TCTTGGAGTTGTGTTTGTAGGTTCCATGCT50041678AATCGGATGCTCAGCTTCTACGCACCTGGTCTGTACCGAACGTTGCATCTTG
Aegilops longissima genome assembly, chromosome: 3S.
LR881071.1:775003405-775003426
TCCATTCCTCTGTCTGTCAGGTACCACGCC775003405AATCGGATGCTCAGCTTCTACGCCCCCGGTGAGCGTCCCGCATTTTCTAAAT
Brassica rapa genome assembly, chromosome: A06.
LS974622.2:53658765-53658786
TCTTGGAGTTGTGTTTGTAGGTTCCATGCT53658765AATCGGATGCTCAGCTTCTACGCACCTGGTCTGTACCGAACGTTGCATCTTG
Thlaspi arvense genome assembly, chromosome: 2.
OU466858.1:5291510-5291531
CTTACGCTTTATCTCCGTAGGTACCATGCA5291510AATCGGATGCTCAGCTTCTACGCACCTGGTTCGTACCGAAGATTGCATTATC
Geum urbanum genome assembly, chromosome: 7.
OX327003.1:64131173-64131194
TCTGTGTTGTTTTTGTGTAGGTACCATGCG64131173AATCGGATGCTCAGCTTCTACGCTCCTGGTATGTAATTATGTTACATTTTGG
Geum urbanum genome assembly, chromosome: 9.
OX327005.1:62007545-62007566
TGTGTGTTGTTTTCGTGTAGGTACCATGCG62007545AATCGGATGCTCAGCTTCTACGCTCCTGGTATGGTAATTTATATAGTTACAT
Draba incana genome assembly, chromosome: 4.
OY755205.1:17080474-17080495
GGTTTTTGACTGATTCGTAGGTACCATGCA17080474AATCGGATGCTCAGCTTCTACGCTCCTGGTTCGTAGTACAGATGATTGCATT
Physcomitrella patens cDNA clone:pphf25m15, 3' end.
BJ955296.1:380-401
TGCTCCGCACCTCCCCGCTCCATCCGGGCG380CGTAGAAGCTGAGCATCCGATTGGCATGATACCACGGGATGTACTTCAACAT
Physcomitrella patens cDNA clone:pphf34g09, 3' end.
BJ957838.1:557-578
TGCTCCGCACCTCCCCGCTCCATCCGGGCG557CGTAGAAGCTGAGCATCCGATTGGCATGATACCACGGGATGTACTTCAACAT
Physcomitrella patens cDNA, clone:ppaa15n21, 3' end.
DC920436.1:411-432
TGCTCCGCACCTCCCCGCTCCATCCGGGCG411CGTAGAAGCTGAGCATCCGATTGGCATGATACCACGGGATGTACTTCAACAT
Physcomitrella patens cDNA, clone:ppgs40n05, 3' end.
DC956158.1:624-645
TGCTCCGCACCTCCCCGCTCCATCCGGGCG624CGTAGAAGCTGAGCATCCGATTGGCATGATACCACGGGATGTACTTCAACAT
0210929 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV144995.1:374-395
CGTCACGAACCTCCCCACACCAACCAGGTG374CGTAGAAGCTGAGCATCCGATTAGCATGGAACCAAGGGATGAAACCAGAAGA
RR3BY02JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EX767129.1:428-449
CGTCACGAACCTCCCCACACCAACCAGGTG428CGTAGAAGCTGAGCATCCGATTTGCATGAAACCAAGGGATGAAACCAGAGGA
RR3BY58JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EX767172.1:427-448
CGTCACGAACCTCCCCACACCAACCAGGTG427CGTAGAAGCTGAGCATCCGATTTGCATGAAACCAAGGGGTGAAACCAGAGGA
RS2CQ73JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EX900937.1:403-424
CGTCACGAACCTCCCCACACCAACCAGGTG403CGTAGAAGCTGAGCATCCGATTTGCATGAAACCAAGGGATGAAACCAGAGGA
RR3E156JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EY911798.1:430-451
CGTCACGAACCTCCCCACACCAACCAGGTG430CGTAGAAGCTGAGCATCCGATTTGCATGAAACCAAGGGATGAAACCAGAGGA
RR4D179JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
EY917416.1:418-439
CGTCACGAACCTCCCCACACCAACCAGGTG418CGTAGAAGCTGAGCATCCGATTTGCATGAAACCAAGGGATGAAACCAGAGGA
CAYZ11009.rev CAYZ Physcomitrella patens subsp. patens Villersexel - regular (L) Physcomitrella patens cDNA clone CAYZ11009 3', mRNA sequence.
FC377096.1:594-615
TGCTCCGCACCTCCCCGCTCCATCCGGGCG594CGTAGAAGCTGAGCATCCGATTGGCATGATACCACGGGATGTACTTCAACAT
CAYZ19155.rev CAYZ Physcomitrella patens subsp. patens Villersexel - regular (L) Physcomitrella patens cDNA clone CAYZ19155 3', mRNA sequence.
FC392611.1:571-592
TGCTCCGCACCTCCCCGCTCCATCCGGGCG571CGTAGAAGCTGAGCATCCGATTGGCATGATACCACGGGATGTACTTCAACAT
CBAX6733.rev CBAX Physcomitrella patens subsp. patens Gransden - dessicated (L) Physcomitrella patens cDNA clone CBAX6733 3', mRNA sequence.
FC451511.1:570-591
TGCTCCGCACCTCCCCGCTCCATCCGGGCG570CGTAGAAGCTGAGCATCCGATTGGCATGATACCACGGGATGTACTTCAACAT
RR2ET08JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
FD537448.1:410-431
CGTCACGAACCTCCCCACACCAACCAGGTG410CGTAGAAGCTGAGCATCCGATTTGCATGAAACCAAGGGATGAAACCAGAGGA
RR2F146JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
FD538008.1:396-417
CGTCACGAACCTCCCCACACCAACCAGGTG396CGTAGAAGCTGAGCATCCGATTTGCATGAAACCAAGGGATGAAACCAGAGGA
RR3FD71JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
FD546808.1:407-428
CGTCACGAACCTCCCCACACCAACCAGGTG407CGTAGAAGCTGAGCATCCGATTTGCATGAAACCAAGGGATGAAACCAGAGGA
RR4GK49JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
FD984147.1:421-442
CGTCACGAACCTCCCCACACCAACCAGGTG421CGTAGAAGCTGAGCATCCGATTTGCATGAAACCAAGGGATGAAACCAGAGGA
TSA: Pachycladon cheesemanii 35594_698_7111_5_41.Pachleaf mRNA sequence.
JP975724.1:428-449
CATCTCGAACTTCCCCACACCAACCAGGAG428CGTAGAAGCTGAGCATCCGATTTGCATGGTACCAAGGGATGAAGCCAGAAGA
Geum urbanum genome assembly, chromosome: 8.
OX327004.1:63203817-63203838
CAGAGTCACACATAAATTACATACCAGGAG63203817CGTAGAAGCTGAGCATCCGATTCGCGTGGTACCTACACAAAAACAACACAGA
Draba incana genome assembly, chromosome: 2.
OY755203.1:34561947-34561968
AATGCAATCATCTGTACTACGAACCAGGAG34561947CGTAGAAGCTGAGCATCCGATTTGCATGGTACCTACGAATCCGTCAAAAACC

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