GGGenome | Results

2025-04-09 10:37:41, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 134 unordered pieces.
FJ789657.1:431150-431169

ATAAACGAGTGTTTTATCTTGAATTATTGC431150AATCGGTCCAGTGAATGATATGCTAAGTTGCTAACTAACATAGTAACAAG

Brassica napus genome assembly, chromosome: A07.
HG994361.1:18943327-18943346

ATAAACGAGTGTTTTATCTTGAATTATTGC18943327AATCGGTCCAGTGAATGATATGCTAAGTTGCTAACTAACATAGTAACAAG

Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:10694082-10694101

CTTGTTACTATGTTAGTTAGCAACTTAGCA10694082TATCATTCACTGGACCGATTGCAATAATTCAAGATAAAACACTCGTTTAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.008 | 0.008 | search_start;
0.108 | 0.099 | search_plus_done; http://172.18.8.135:50400/match?q=AATCGGTCCAGTGAATGATA&k=0&no_gap=0&offset=0&limit=50
0.134 | 0.027 | search_minus_done; http://172.18.8.135:50400/match?q=TATCATTCACTGGACCGATT&k=0&no_gap=0&offset=0&limit=48
0.135 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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