GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 08:42:04, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

AFP0ABA10YF22RM1 BAC end, cultivar HD200-94 of Coffea canephora, genomic survey sequence.
FO624756.1:601-627
CTAGCTAAACACTCAAGGAAGGTTGGTTTT601AATCGGTTTAGTTTTTTGTTTCCTCACTTGGATGATCCAAATTCAAGATGGATTAGG
AFP0ABA38YN03RM1 BAC end, cultivar HD200-94 of Coffea canephora, genomic survey sequence.
FO632669.1:601-627
CTAGCTAAACACTCAAGGAAGGTTGGTTTT601AATCGGTTTAGTTTTTTGTTTCCTCACTTGGATGATCCAAATTCAAGATGGATTAGG
AFP0ABA56YC03FM1 BAC end, cultivar HD200-94 of Coffea canephora, genomic survey sequence.
FO648446.1:601-627
CTAGCTAAACACTCAAGGAAGGTTGGTTTT601AATCGGTTTAGTTTTTTGTTTCCTCACTTGGATGATCCAAATTCAAGATGGATTAGG
AFP0ABA72YD10RM1 BAC end, cultivar HD200-94 of Coffea canephora, genomic survey sequence.
FO665584.1:597-623
ACCAGTAGCTAAACACTCAAGGAAGGTTTT597AATCGGTTTAGTTTTTTGTTTCCTCACTTGGATGATCCAAA
CGN-57588 Cherry of Early Development Stage Coffea canephora cDNA clone cccwc22w18l5 5', mRNA sequence.
DV709318.1:189-215
CCCAATCCATCTTGAAATTGGATCATCCAA189GTGAGGAAACAAAAAACTAAACCGATTAAAACCTTCCTTGAGTGTTTAGCTAGTGGG
CGN-58857 Cherry of Early Development Stage Coffea canephora cDNA clone cccwc22w27p11 5', mRNA sequence.
DV710341.1:189-215
CCCAATCCATCTTGAAATTGGATCATCCAA189GTGAGGAAACAAAAAACTAAACCGATTAAAACCTTCCTTGAGTGTTTAGCTAGTGGG
AFP0ABA27YE09RM1 BAC end, cultivar HD200-94 of Coffea canephora, genomic survey sequence.
FO612128.1:623-649
ACCATTTCATCTTGAAATTGAATCATCCAA623GTGAGGAAACAAAAAACTAAACCGATTAAAACCTTCCTTGAGTGTTTAGCTAGTGGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AATCGGTTTAGTTTTTTGTTTCCTCAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AATCGGTTTAGTTTTTTGTTTCCTCAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.217 | 0.208 | search_plus_done; http://172.18.8.135:50400/match?q=AATCGGTTTAGTTTTTTGTTTCCTCAC&k=0&no_gap=0&offset=0&limit=50
0.540 | 0.322 | search_minus_done; http://172.18.8.135:50400/match?q=GTGAGGAAACAAAAAACTAAACCGATT&k=0&no_gap=0&offset=0&limit=46
0.542 | 0.002 | cgi_end;

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