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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:10:09, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Malus x robusta genome assembly, chromosome: 5.
OY720329.1:38498234-38498253
ATACCCTCTTCCCCTTGGAATTGGACATTT38498234AATCGTCCCTTCATGTCCAGAGTAGGCCGCATGCGCAACTGATTATAAGA
Pyrus communis genome assembly, chromosome: 8.
OY757075.1:25560080-25560099
ATACCCTCTTCCCCTTGGAATTGGACATTT25560080AATCGTCCCTTCATGTCCAGAGTAGGCCGCATGCGCAACTGATTATAAGA
Mdlr7003E23.g1 Apple_EST_Mdlr Malus domestica cDNA similar to pir|H96599 protein F14J16.10 [imported] - Arabidopsis thaliana gb|AAF79338.1|AC002304_31 F14J16.10 [Arabidopsis thaliana], mRNA sequence.
DR990131.1:415-434
TCTTATAATCAGTTGCGCATGCGGCCTACT415CTGGACATGAAGGGACGATTAAATGTCCAATTCCAAGGGGAAGAGGGTAT
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:2557224-2557243
TCTTATAATCAGTTGCGCATGCGGCCTACT2557224CTGGACATGAAGGGACGATTAAATGTCCAATTCCAAGGGGAAGAGGGTAT
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:2631922-2631941
TCTTATAATCAGTTGCGCATGCGGCCTACT2631922CTGGACATGAAGGGACGATTAAATGTCCAATTCCAAGGGGAAGAGGGTAT
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:2711624-2711643
TCTTATAATCAGTTGCGCATGCGGCCTACT2711624CTGGACATGAAGGGACGATTAAATGTCCAATTCCAAGGGGAAGAGGGTAT
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141980.1:2702186-2702205
TCTTATAATCAGTTGCGCATGCGGCCTACT2702186CTGGACATGAAGGGACGATTAAATGTCCAATTCCAAGGGGAAGAGGGTAT
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:2618497-2618516
TCTTATAATCAGTTGCGCATGCGGCCTACT2618497CTGGACATGAAGGGACGATTAAATGTCCAATTCCAAGGGGAAGAGGGTAT
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143385.1:2631776-2631795
TCTTATAATCAGTTGCGCATGCGGCCTACT2631776CTGGACATGAAGGGACGATTAAATGTCCAATTCCAAGGGGAAGAGGGTAT
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:2726196-2726215
TCTTATAATCAGTTGCGCATGCGGCCTACT2726196CTGGACATGAAGGGACGATTAAATGTCCAATTCCAAGGGGAAGAGGGTAT
Malus domestica genome assembly, chromosome: 11.
OU696687.1:2714454-2714473
TCTTATAATCAGTTGCGCATGCGGCCTACT2714454CTGGACATGAAGGGACGATTAAATGTCCAATTCCAAGGGGAAGAGGGTAT
Malus domestica genome assembly, chromosome: 11.
OU744552.1:2791466-2791485
TCTTATAATCAGTTGCGCATGCGGCCTACT2791466CTGGACATGAAGGGACGATTAAATGTCCAATTCCAAGGGGAAGAGGGTAT
Malus domestica genome assembly, chromosome: 11.
OU744963.1:2831418-2831437
TCTTATAATCAGTTGCGCATGCGGCCTACT2831418CTGGACATGAAGGGACGATTAAATGTCCAATTCCAAGGGGAAGAGGGTAT
Malus domestica genome assembly, chromosome: 11.
OU745001.1:2775679-2775698
TCTTATAATCAGTTGCGCATGCGGCCTACT2775679CTGGACATGAAGGGACGATTAAATGTCCAATTCCAAGGGGAAGAGGGTAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AATCGTCCCTTCATGTCCAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AATCGTCCCTTCATGTCCAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.149 | 0.140 | search_plus_done; http://172.18.8.135:50400/match?q=AATCGTCCCTTCATGTCCAG&k=0&no_gap=0&offset=0&limit=50
0.273 | 0.123 | search_minus_done; http://172.18.8.135:50400/match?q=CTGGACATGAAGGGACGATT&k=0&no_gap=0&offset=0&limit=48
0.281 | 0.008 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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