GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-10 10:31:41, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

STRS1_2_C06.b1_A034 Shoot tip pitch canker susceptible Pinus taeda cDNA clone STRS1_2_C06_A034 3', mRNA sequence.
DR015201.1:137-156
AAGTGCCGCAGCAATTGCCCCAACATCGTC137AATCTATATGTCAATCTCGCTGCAGGAGAAGGAATATCTCTATCGAGTAT
STRS1_4_C05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda cDNA clone STRS1_4_C05_A034 5', mRNA sequence.
DR015609.1:426-445
AAGTGCCGCGGCAGTTGCCCCAACATCGTC426AATCTATATGTCAATCTCGCTGCAGGAGAAGGAATATCTCTATCGAGTAT
Pinus thunbergii mRNA, clone: Pt_SSH_3dpi_S_205R, unspecified EST.
FY842601.1:163-182
AAGTGCCGCAGCAATTGCCCCAACATCGTC163AATCTATATGTCAATCTCGCTGCAGGAGAAGGAATATCTCTATCGAGTAT
Pinus thunbergii mRNA, clone: Pt_SSH_14dpi_R_027R, unspecified EST.
FY843972.1:49-68
AAGTGCCGCAGCAATTGCCCCAACATCGTC49AATCTATATGTCAATCTCGCTGCAGGAGAAGGAATATCTCTATCGAGTAT
PCO021.C21_F14 Pco02-Xylem-wounded-Norm (PCO02) Pinus contorta cDNA clone PCO021_F14 5', mRNA sequence.
GT257921.1:560-579
AAGTGCCGCGGCAGTTGCCCCAACATCGTC560AATCTATATGTCAATCTCGCTGCAGGAGAAGGAATATCTCTATCGAGTAT
PCO021.CR_F14 Pco02-Xylem-wounded-Norm (PCO02) Pinus contorta cDNA clone PCO021_F14 3', mRNA sequence.
GT258280.1:376-395
AAGTGCCGCGGCAGTTGCCCCAACATCGTC376AATCTATATGTCAATCTCGCTGCAGGAGAAGGAATATCTCTATCGAGTAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AATCTATATGTCAATCTCGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AATCTATATGTCAATCTCGC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
1.354 | 1.345 | search_plus_done; http://172.18.8.135:50400/match?q=AATCTATATGTCAATCTCGC&k=0&no_gap=0&offset=0&limit=50
1.473 | 0.119 | search_minus_done; http://172.18.8.135:50400/match?q=GCGAGATTGACATATAGATT&k=0&no_gap=0&offset=0&limit=44
1.473 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).