GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 18:12:17, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Flame chromosome 17.
CP141926.1:678179-678202
AGATTCTGATTGAAAACCCATTATTAAATT678179AATCTCCTGGTTTTGATACATTCAAATTAACCAACAATGCAGAAATTCAAATGG
Malus hybrid cultivar cultivar Flame chromosome 17.
CP141943.1:737016-737039
AGATTCTGATTGAAAACCCATTATTAAATT737016AATCTCCTGGTTTTGATACATTCAAATTAACCAACAATGCAGAATTTCAAATGG
Malus x robusta genome assembly, chromosome: 11.
OY720335.1:742879-742902
AGATTCTGATTGAAAACCCATTATTAAATT742879AATCTCCTGGTTTTGATACATTCAAATTAACCAACAATGCAGAAATTCAAATGG
Pyrus communis genome assembly, chromosome: 11.
OY757078.1:630839-630862
AGATTCTGATTGAAAACCCATTATTAAATT630839AATCTCCTGGTTTTGATACATTCAAACCAACAATGCAGAAATTCAAATGGAAGT
Malus hybrid cultivar cultivar Royalty chromosome 17.
CP141969.1:33170788-33170811
CCATTTGAATTTCTGCATTGTTGGTTAATT33170788TGAATGTATCAAAACCAGGAGATTAATTTAATAATGGGTTTTCAATCAGAATCT
Malus hybrid cultivar cultivar Royalty chromosome 17.
CP141986.1:34036443-34036466
CCATTTGAAATTCTGCATTGTTGGTTAATT34036443TGAATGTATCAAAACCAGGAGATTAATTTAATAATGGGTTTTCAATCAGAATCT
Malus hybrid cultivar cultivar SH6 chromosome 17.
CP143374.1:33521996-33522019
CCATTTGAAATTCTGCATTGTTGGTTAATT33521996TGAATGTATCAAAACCAGGAGATTAATTTAATAATGGGTTTTCAATCAGAATCT
Malus hybrid cultivar cultivar SH6 chromosome 17.
CP143391.1:31132120-31132143
CCATTTGAATTTCTGCATCGTTGGTTAATT31132120TGAATGTATCAAAACCAGGAGATTAATTTAATAATGGGTTTTCAATCAGAATCT
Malus sylvestris genome assembly, chromosome: 17.
OU696519.1:33120774-33120797
CCATTTGAAATTCTGCATTGTTGGTTAATT33120774TGAATGTATCAAAACCAGGAGATTAATTTAATAATGGGTTTTCAATCAGAATCT
Malus domestica genome assembly, chromosome: 17.
OU696693.1:33386668-33386691
CCATTTGAAATTCTGCATTGTTGGTTAATT33386668TGAATGTATCAAAACCAGGAGATTAATTTAATAATGGGTTTTCAATCAGAATCT
Malus domestica genome assembly, chromosome: 17.
OU744558.1:34110722-34110745
CCATTTGAAATTCTGCATTGTTGGTTAATT34110722TGAATGTATCAAAACCAGGAGATTAATTTAATAATGGGTTTTCAATCAGAATCT
Malus domestica genome assembly, chromosome: 17.
OU744969.1:33125648-33125671
CCATTTGAAATTCTGCATTGTTGGTTAATT33125648TGAATGTATCAAAACCAGGAGATTAATTTAATAATGGGTTTTCAATCAGAATCT
Malus domestica genome assembly, chromosome: 17.
OU745007.1:33268044-33268067
CCATTTGAAATTCTGCATTGTTGGTTAATT33268044TGAATGTATCAAAACCAGGAGATTAATTTAATAATGGGTTTTCAATCAGAATCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AATCTCCTGGTTTTGATACATTCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AATCTCCTGGTTTTGATACATTCA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.332 | 0.324 | search_plus_done; http://172.18.8.135:50400/match?q=AATCTCCTGGTTTTGATACATTCA&k=0&no_gap=0&offset=0&limit=50
0.416 | 0.084 | search_minus_done; http://172.18.8.135:50400/match?q=TGAATGTATCAAAACCAGGAGATT&k=0&no_gap=0&offset=0&limit=46
0.422 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).