GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 02:51:21, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Mdfw2034i14.y1 Mdfw Malus domestica cDNA clone Mdfw2034i14 5' similar to TR:Q9XIF0 Q9XIF0 PUTATIVE DISEASE RESISTANCE PROTEIN, mRNA sequence.
CN582049.1:1-23
1AATCTGTTGGAGCTAACTTTGGATATCAATGCATATGATGGTGTGCAGCTGCA
Mdst6015a15.y1 Mdst Malus domestica cDNA clone Mdst6015a15 5' similar to TR:Q9ZSH2 Q9ZSH2 DISEASE RESISTANCE GENE HOMOLOG 1A, mRNA sequence.
CV658464.1:258-280
TCCCCACTAAAAGCCCTTCAAAATCTACCT258AATCTGTTGGAGCTAACTTTGGATATCAATGCATATGATGGTGTGCAGCTGCA
Mdst6018l20.y3 Mdst Malus domestica cDNA clone Mdst6018l20 5' similar to TR:Q9ZSH1 Q9ZSH1 DISEASE RESISTANCE GENE HOMOLOG 9N, mRNA sequence.
CV880518.1:258-280
TCCCCACTAAAAGCCCTTCAAAATCTACCT258AATCTGTTGGAGCTAACTTTGGATATCAATGCATATGATGGTGTGCAGCTGCA
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141910.1:40175242-40175264
TCCCCACTAAAAGCCCTTCAAAATCTACCT40175242AATCTGTTGGAGCTAACTTTGGATATCAATGCATATGATGGTGTGCAGCTGCA
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141927.1:29649477-29649499
TCCCCACTAAAAGCCCTTCAAAATCTACCT29649477AATCTGTTGGAGCTAACTTTGGATATCAATGCATATGATGGTGTGCAGCTGCA
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143358.1:29251600-29251622
TCCCCACTAAAAGCCCTTCAAAATCTACCT29251600AATCTGTTGGAGCTAACTTTGGATATCAATGCATATGATGGTGTGCAGCTGCA
Malus sylvestris genome assembly, chromosome: 1.
OU696503.1:25965222-25965244
TCCCCACTAAAAGCCCTTCAAAATCTACCT25965222AATCTGTTGGAGCTAACTTTGGATATCAATGCATATGATGGTGTGCAGCTGCA
Malus domestica genome assembly, chromosome: 1.
OU744542.1:29770803-29770825
TCCCCACTAAAAGCCCTTCAAAATCTACCT29770803AATCTGTTGGAGCTAACTTTGGATATCAATGCATATGATGGTGTGCAGCTGCA
Malus domestica genome assembly, chromosome: 1.
OU744991.1:26244477-26244499
TCCCCACTAAAAGCCCTTCAAAATCTACCT26244477AATCTGTTGGAGCTAACTTTGGATATCAATGCATATGATGGTGTGCAGCTGCA
010619AEPA003853CR (AEPA) Pinkie expanding leaf Malus domestica cDNA clone AEPAA00385, mRNA sequence.
EE663811.1:584-606
TGCAGCTGCACACCATCATATGCATTGATA584TCCAAAGTTAGCTCCAACAGATTAGGTAGATTTTGAAGGGCTTTTAGTGGGGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AATCTGTTGGAGCTAACTTTGGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AATCTGTTGGAGCTAACTTTGGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.260 | 0.252 | search_plus_done; http://172.18.8.135:50400/match?q=AATCTGTTGGAGCTAACTTTGGA&k=0&no_gap=0&offset=0&limit=50
0.368 | 0.107 | search_minus_done; http://172.18.8.135:50400/match?q=TCCAAAGTTAGCTCCAACAGATT&k=0&no_gap=0&offset=0&limit=41
0.368 | 0.001 | cgi_end;

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