GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 03:27:07, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Lactuca sativa Letassy_X1_330 mRNA sequence.
JI574837.1:2987-3006
AAGGGGAAGATGCTAGGGATTTGAGAAGGT2987AATGCCATAGTGAAGCTGGGACTAATCGATATGACTCGGCGAGTTTTGAG
TSA: Lactuca serriola Serrassy_T_P2_54036 mRNA sequence.
JO022200.1:2556-2575
AAGGGGAAGATGCTAGGGATTTGAGAAGGT2556AATGCCATAGTGAAGCTGGGACTAATCGATATGACTCGGCGAGTTGTGAG
QGC15D16.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC15D16, mRNA sequence.
BQ860243.1:326-345
CTCAAAACTCGCCGAGTCATATCGATTAGT326CCCAGCTTCACTATGGCATTACCTTCTCAAATCCCTAGCATCTTCCCCTT
QGC15D23.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC15D23, mRNA sequence.
BQ860249.1:326-345
CTCAAAACTCGCCGAGTCATATCGATTAGT326CCCAGCTTCACTATGGCATTACCTTCTCAAATCCCTAGCATCTTCCCCTT
QGD10D01.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGD10D01, mRNA sequence.
BQ867229.1:326-345
CTCAAAACTCGCCGAGTCATATCGATTAGT326CCCAGCTTCACTATGGCATTACCTTCTCAAATCCCTAGCATCTTCCCCTT
QGD8E06.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGD8E06, mRNA sequence.
BQ870153.1:326-345
CTCAAAACTCGCCGAGTCATATCGATTAGT326CCCAGCTTCACTATGGCATTACCTTCTCAAATCCCTAGCATCTTCCCCTT
QGD9C24.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGD9C24, mRNA sequence.
BQ870485.1:287-306
CTCAGAACTCGCCGAGTCATATCGATTAGT287CCCAGCTTCACTATGGCATTACCTTCTCAAATCCCTAGCATCTTCCCCTT
QGG19G15.yg.ab1 QG_EFGHJ lettuce serriola Lactuca serriola cDNA clone QGG19G15, mRNA sequence.
BQ998397.1:324-343
CTCACAACTCGCCGAGTCATATCGATTAGT324CCCAGCTTCACTATGGCATTACCTTCTCAAATCCCTAGCATCTTCCCCTT
QGG31K07.yg.ab1 QG_EFGHJ lettuce serriola Lactuca serriola cDNA clone QGG31K07, mRNA sequence.
BU002537.1:315-334
CTCACAACTCGCCGAGTCATATCGATTAGT315CCCAGCTTCACTATGGCATTACCTTCTCAAATCCCTAGCATCTTCCCCTT
QGH10N13.yg.ab1 QG_EFGHJ lettuce serriola Lactuca serriola cDNA clone QGH10N13, mRNA sequence.
BU006367.1:326-345
CTCACAACTCGCCGAGTCATATCGATTAGT326CCCAGCTTCACTATGGCATTACCTTCTCAAATCCCTAGCATCTTCCCCTT
CTOX14834.b1_C14.ab1 CTO(XYZ) dandelion Taraxacum officinale cDNA clone CTOX14834, mRNA sequence.
DY806675.1:313-332
TTCACAACTCGCCGAGTTATATCGATTAGT313CCCAGCTTCACTATGGCATTACCTTCTCAAATCCTTAGCATCTTCCCCTT
Pulicaria dysenterica genome assembly, chromosome: 1.
OX359288.1:106208814-106208833
GTTGCATCTCGCCGAGTCATACCGATTAGT106208814CCCAGCTTCACTATGGCATTACCTTCTCAAATCCCTAGCATCTTCCCCTT
Lactuca saligna genome assembly, chromosome: 8.
OX465084.1:23298007-23298026
CTCACAACTCGCCGAGTCATATCGATTAGT23298007CCCAGCTTCACTATGGCATTACCTTCTCAAATCCCTAGCATCTTCCCCTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AATGCCATAGTGAAGCTGGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AATGCCATAGTGAAGCTGGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.110 | 0.101 | search_plus_done; http://172.18.8.135:50400/match?q=AATGCCATAGTGAAGCTGGG&k=0&no_gap=0&offset=0&limit=50
0.344 | 0.235 | search_minus_done; http://172.18.8.135:50400/match?q=CCCAGCTTCACTATGGCATT&k=0&no_gap=0&offset=0&limit=48
0.351 | 0.007 | cgi_end;

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