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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 14:55:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Gossypium turneri isolate D10-2 chromosome D10_05.
CP032575.1:43566225-43566244
CTAACCGGTTGATTCGCAAGTGCCTTTTTC43566225AATGCGCCCTCATTATTTTGTGGAACATCTTCATAAGAGTCAATTGTAAC
Gossypium herbaceum isolate Zhongcao1 chromosome 5.
CP106692.1:75052870-75052889
CTAACCGGTTGACTCGCAAGTGCCTTTTTC75052870AATGCGCCCTCATTATTTTGTGGAACATCTTCATAAGAGTCAATTGTAAC
Gossypium rotundifolium isolate GPK201 chromosome 13.
CP106734.1:170498610-170498629
CTAACCGGTTGATTCGCAAGTGCCTTTTTC170498610AATGCGCCCTCATTATTTTGTGGAACATCTTCATAAGAGTCAATTGTAAC
Agriphila geniculea genome assembly, chromosome: 24.
OX038894.1:3381178-3381197
TAAAATCACTATGCTGATTTCAAATTTGAC3381178AATGCGCCCTCATTATTTTGATGATTAAATTGAATTTAAATTAATAAAAT
GA__Ea0017J22f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0017J22f, mRNA sequence.
BG442603.1:66-85
GTTACAATTGACTCTTATGAAGATGTTCCA66CAAAATAATGAGGGCGCATTGAAAAAGCACTTGCGAGTCAACCGGTTAGC
EST1074147 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT563507.1:775-794
GTTACAATTGACTCTTATGAAGATGTTCCA775CAAAATAATGAGGGCGCATTGAAAA
GH_HYPS_01-01-12R_B12_InvR_14Apr04_094 Stem - 7 weeks after planting Gossypium hirsutum cDNA, mRNA sequence.
DW224594.1:81-100
GTTACAATTGACTCTTATGAAGATGTTCCA81CAAAATAATGAGGGCGCATTGAAAAAGGCACTTGCGAATCAACCGGTTAG
UFL_516_48 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES794979.1:389-408
GTTACAATTGACTCTTATGAAGATGTTCCA389CAAAATAATGAGGGCGCATTGAAAAAGGCACTTGCGAATCAACCGGTTAG
UFL_620_93 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES805423.1:777-796
GTTACAATTGACTCTTATGAAGATGTTCCA777CAAAATAATGAGGGCGCATTGGAAAAGGGACTTGCGAATCAACCGGGTAG
UFL_344_66 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES827221.1:259-278
GTTACAATTGACTCTTATGAAGATGTTCCA259CAAAATAATGAGGGCGCATTGAAAAAGGCACTTGCGAATCAACCGGTTAG
UFL_047_40 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES838809.1:82-101
GTTACAATTGACTCTTATGAAGATGTTCCA82CAAAATAATGAGGGCGCATTGAAAAAGGCACTTGCGAATCAACCGGTTAG
C01-70C01 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK790266.1:244-263
GTTACAATTGACTCTTATGAAGATGTTCCA244CAAAATAATGAGGGCGCATTGAAAAAGGCACTTGCGAGTCAACCGGTTAG
G08-69G08 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK791526.1:248-267
GTTACAATTGACTCTTATGAAGATGTTCCA248CAAAATAATGAGGGCGCATTGAAAAAGGCACTTGCGAGTCAACCGGTTAG
ndcxb0_0011_F08.ab1 Upland cotton seedling roots at salt stress 3h (ndcxb) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ372049.1:231-250
GTTACAATTGACTCTTATGAAGATGTTCCA231CAAAATAATGAGGGCGCATTGAAAAAGGCACTTGCGAGTCAACCGGTTAG
ndcxe0_0021_G04.ab1 Upland cotton seedling roots at 3h control (ndcxe) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ381333.1:188-207
GTTACAATTGACTCTTATGAAGATGTTCCA188CAAAATAATGAGGGCGCATTGAGAAAGGCACTTGCGAGTCAACCGGTTAG
ndcxf0_0031_A01.ab1 Upland cotton seedling roots at salt stress 12h (ndcxf) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ384965.1:253-272
GTTACAATTGACTCTTATGAAGATGTTCCA253CAAAATAATGAGGGCGCATTGAAAAAGGCACTTGCGAATCAACCGGTTAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AATGCGCCCTCATTATTTTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AATGCGCCCTCATTATTTTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.107 | 0.099 | search_plus_done; http://172.18.8.135:50400/match?q=AATGCGCCCTCATTATTTTG&k=0&no_gap=0&offset=0&limit=50
0.816 | 0.709 | search_minus_done; http://172.18.8.135:50400/match?q=CAAAATAATGAGGGCGCATT&k=0&no_gap=0&offset=0&limit=46
0.824 | 0.008 | cgi_end;

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