GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 01:31:56, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar SH6 chromosome 4.
CP143378.1:9441181-9441203
CGGAGGGATCGGACTTGCACTGTTCGACGA9441181AATGCTTGAGTTGGTTGAGCTTCGCCTCGTCCATTTGTAAAAGTTTCAGAGAG
Crataegus laevigata genome assembly, chromosome: 7.
OY756944.1:10869936-10869958
CGGAGGGATCGGACTTGCACTGTTCGACAA10869936AATGCTTGAGTTGGTTGAGCTTCGCCTCGTCCATTTGTAAAAGTTTGAGAGAG
Pyrus communis genome assembly, chromosome: 17.
OY757084.1:7456628-7456650
CGGAGGGATCGGATTTGCACTGTTCGACGA7456628AATGCTTGAGTTGGTTGAGCTTCGCCTCGTCCATTTGTAAAAGTTTCAGAGAG
Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH019_03815m, 5' end sequence.
AB450704.1:109-131
CTCTCTGAAACTTTTACAAATGGACGAGGC109GAAGCTCAACCAACTCAAGCATTTCGTCGAACAGTGCAAATCCGATCCCTCCG
Pyrus pyrifolia mRNA, clone: NFR2_08_15, 5' end sequence, expressed in fruit.
HX748902.1:25-47
GAAACTTTTACAAATGGACGAGGC25GAAGCTCAACCAACTCAAGCATTTCGTCGAACAGTGCAAATCCGATCCCTCCG
Pyrus pyrifolia mRNA, clone: NFR2_08_46, 5' end sequence, expressed in fruit.
HX748926.1:25-47
GAAACTTTTACAAATGGACGAGGC25GAAGCTCAACCAACTCAAGCATTTCGTCGAACANNNCAAATCCGATCCCTCCG
TSA: Pyrus pyrifolia mRNA, contig: contig_811revcomp.
FX433651.1:52-74
CTCTCTGAAACTTTTACAAATGGACGAGGC52GAAGCTCAACCAACTCAAGCATTTCGTCGAACAGTGCAAATCCGATCCCTCCG
TSA: Pyrus communis mRNA, contig: lc16923.
FX625480.1:25-47
GAAACTTTTACAAATGGACGAGGC25GAAGCTCAACCAACTCAAGCATTTCGTCGAACAGTGCAAATCCGATCCCTCCG
TSA: Pyrus x bretschneideri Unigene28095_XinShao mRNA sequence.
JR621389.1:43-65
CTCTCTGAAACTTTTACAAATGGACGAGGC43GAAGCTCAACCAACTCAAGCATTTCGTCGAACAGTGCAAATCCGATCCCTCCG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AATGCTTGAGTTGGTTGAGCTTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AATGCTTGAGTTGGTTGAGCTTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.094 | 0.085 | search_plus_done; http://172.18.8.135:50400/match?q=AATGCTTGAGTTGGTTGAGCTTC&k=0&no_gap=0&offset=0&limit=50
0.322 | 0.228 | search_minus_done; http://172.18.8.135:50400/match?q=GAAGCTCAACCAACTCAAGCATT&k=0&no_gap=0&offset=0&limit=47
0.327 | 0.004 | cgi_end;

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