GGGenome Help | English

データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-07 10:53:12, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

65JKBNM0_T3_008_A02_16MAR2005_016 65JKBNM0 Brassica napus cDNA 5', mRNA sequence.
EL587311.1:135-154
ACTTAGAAAATCCAGAAAAGATTTTGCCTA135AATGGCTTCGTTTGAAATCCTTAGGCTTTAGATAGATAAACCTATCTAAT
69JKME5D_T3_020_B01_28MAR2005_013 69JKME5D Brassica napus cDNA 5', mRNA sequence.
ES267773.1:141-160
ACTTAGAAAATCCAGAAAAGATTTTGCCTA141AATGGCTTCGTTTGAAATCCTTAGGCTTTAGATAGATAAACCTATCTAAT
0141186 Brassica napus Early anther Brassica napus cDNA, mRNA sequence.
EV151264.1:129-148
ACTTAGAAAATTCAGAAAAGATTTTGCCTA129AATGGCTTCGTTTGAAATCCTTAGGCTTTAGATAGATAAACCTATCTAAT
BR024623 floral bud cDNA library KBFL Brassica rapa subsp. pekinensis cDNA clone KBFL-072C06 5', mRNA sequence.
EX039979.1:62-81
ACTTAGAAAATCCAGAAAAGATTTTGCCTA62AATGGCTTCGTTTGAAATCCTTAGGCTTTAGATAGATAAACCTATCTAAT
BOGRZ19TF BOGR Brassica oleracea genomic clone BOGRZ19, genomic survey sequence.
BH444341.1:65-84
TTAAGAAATTTCATTAAAAGATTTTACCTA65AATGGCTTCGTTTGAAATCCTTAGGCTTTAGATAGATAAACCTATCTAAT
Brassica napus cultivar Xiang5A chromosome 1.
CP123876.1:7876107-7876126
ACTTAGAAAATCCAGAAAAGATTTTGCCTA7876107AATGGCTTCGTTTGAAATCCTTAGGCTTTAGATAGATAAACCTATCTAAT
Brassica napus genome assembly, chromosome: A02.
HG994356.1:7608874-7608893
ACTTAGAAAATCCAGAAAAGATTTTGCCTA7608874AATGGCTTCGTTTGAAATCCTTAGGCTTTAGATAGATAAACCTATCTAAT
Brassica napus genome assembly, chromosome: C02.
HG994366.1:12033610-12033629
ACTTAGAAAATTCAGAAAAGATTTTACCTA12033610AATGGCTTCGTTTGAAATCCTTAGGCTTTAGATAGATAAACCTATCTAAT
Brassica rapa genome, scaffold: A02.
LR031573.1:7459895-7459914
ACTTAGAAAATCCAGAAAAGATTTTGCCTA7459895AATGGCTTCGTTTGAAATCCTTAGGCTTTAGATAGATAAACCTATCTAAT
Brassica oleracea HDEM genome, scaffold: C2.
LR031874.1:13557723-13557742
ACTTAGAAAATTCAGAAAAGATTTTGCCTA13557723AATGGCTTCGTTTGAAATCCTTAGGCTTTAGATAGATAAACCTATCTAAT
Brassica rapa genome assembly, chromosome: A02.
LS974618.2:7637221-7637240
ACTTAGAAAATCCAGAAAAGATTTTGCCTA7637221AATGGCTTCGTTTGAAATCCTTAGGCTTTAGATAGATAAACCTATCTAAT
Lycaena phlaeas genome assembly, chromosome: 11.
HG995174.1:5709550-5709569
TGTGTGGATGTTAATGGGCGTCGATAGTCG5709550AATGGCTTCGTTTGAAATCCTATTCTATTAAAAAAAACTAAGGCGTTAAA
Gibbula magus genome assembly, chromosome: 4.
OW388292.1:15680241-15680260
CAGAAATGGTTTAACTCATTTGCTATGAGA15680241AATGGCTTCGTTTGAAATCCGTGAGTTTTCAATTTGTTGTCTTAAAGGGG
KR 1020010012040-A/2: PLANT TISSUE SPECIFIC PROMOTERS.
DI047337.1:2301-2320
ATTAGATAGGTTTATCTATCTAAAGCCTAA2301GGATTTCAAACGAAGCCATTTAGGCAAAATGCTTTTCTGGATTTTCTAAG
RFO2.001N05F000720 RFO2 Brassica napus cDNA clone RFO2001N05, mRNA sequence.
CD838071.1:359-378
ATTAGATAGGTTTATCTATCTAAAGCCTAA359GGATTTCAAACGAAGCCATTTAGGCAAAATCTTTTCTGGATTTTCTAAGT
RFO2.110L16F010522 RFO2 Brassica napus cDNA clone RFO2110L16, mRNA sequence.
CD838313.1:376-395
ATTAGATAGGTTTATCTATCTAAAGCCTAA376GGATTTCAAACGAAGCCATTTAGGCAAAATCTTTTCTGGATTTTCTAAGT
RFO2.112J22F010523 RFO2 Brassica napus cDNA clone RFO2112J22, mRNA sequence.
CD838805.1:384-403
ATTAGATAGGTTTATCTATCTAAAGCCTAA384GGATTTCAAACGAAGCCATTTAGGCAAAATCTTTTCTGAATTTTCTAAGT
RFO2.124P15F010620 RFO2 Brassica napus cDNA clone RFO2124P15, mRNA sequence.
CD841862.1:352-371
ATTAGATAGGTTTATCTATCTAAAGCCTAA352GGATTTCAAACGAAGCCATTTAGGCAAAATCTTTTCTGGATTTTCTAAGT
RFO2.127M05F010919 RFO2 Brassica napus cDNA clone RFO2127M05, mRNA sequence.
CD842488.1:389-408
ATTAGATAGGTTTATCTATCTAAAGCCTAA389GGATTTCAAACGAAGCCATTTAGGCAAAATCTTTTCTGAATTTTCTAAGT
RFO2.129E07F010921 RFO2 Brassica napus cDNA clone RFO2129E07, mRNA sequence.
CD842844.1:351-370
ATTAGATAGGTTTATCTATCTAAAGCCTAA351GGATTTCAAACGAAGCCATTTAGGCAAAATCTTTTCTGGATTTTCTAAGT
RFO2.130H12F011011 RFO2 Brassica napus cDNA clone RFO2130H12, mRNA sequence.
CD843094.1:356-375
ATTAGATAGGTTTATCTATCTAAAGCCTAA356GGATTTCAAACGAAGCCATTTAGGCAAAATCTTTTCTGGATTTTCTAAGT
RFO2.131E13F010925 RFO2 Brassica napus cDNA clone RFO2131E13, mRNA sequence.
CD843276.1:385-404
ATTAAATAGGTTTATCTATCTAAAGCCTAA385GGATTTCAAACGAAGCCATTTAGGCAAAATCTTTTCTGAATTTTCTAAGT
RFO2.132M16F011016 RFO2 Brassica napus cDNA clone RFO2132M16, mRNA sequence.
CD843566.1:384-403
ATTAGATAGGTTTATCTATCTAAAGCCTAA384GGATTTCAAACGAAGCCATTTAGGCAAAATCTTTTCTGAATTTTCTAAGT
RFO2.134O10F011010 RFO2 Brassica napus cDNA clone RFO2134O10, mRNA sequence.
CD843978.1:387-406
ATTAGATAGGTTTATCTATCTAAAGCCTAA387GGATTTCAAACGAAGCCATTTAGGCAAAATCTTTTCTGAATTTTCTAAGT
RFO2.139C10F011221 RFO2 Brassica napus cDNA clone RFO2139C10, mRNA sequence.
CD844545.1:408-427
ATTAGATAGGTTTATCTATCTAAAGCCTAA408GGATTTCAAACGAAGCCATTTAGGCAAAATCTTTTCTGAATTTTCTAAGT
RFO2.141A05F011226 RFO2 Brassica napus cDNA clone RFO2141A05, mRNA sequence.
CD844951.1:408-427
ATTAGATAGGTTTATCTATCTAAAGCCTAA408GGATTTCAAACGAAGCCATTTAGGCAAAATCTTTTCTGAATTTTCTAAGT
RFO2.141B01F011226 RFO2 Brassica napus cDNA clone RFO2141B01, mRNA sequence.
CD844963.1:361-380
ATTAGATAGGTTTATCTATCTAAAGCCTAA361GGATTTCAAACGAAGCCATTTAGGCAAAATCTTTTCTGGATTTTCTAAGT
RFO2.141K13F011226 RFO2 Brassica napus cDNA clone RFO2141K13, mRNA sequence.
CD845105.1:395-414
ATTAGATAGGTTTATCTATCTAAAGCCTAA395GGATTTCAAACGAAGCCATTTAGGCAAAATCTTTTCTGAATTTTCTAAGT
12JKBNM1_UP_001_E03_19NOV2003_023 12JKBNM1 Brassica napus cDNA 5', mRNA sequence.
CN727724.1:359-378
ATTAGATAGGTTTATCTATCTAAAGCCTAA359GGATTTCAAACGAAGCCATTTAGGCAAAATCTTTTCTGGATTTTCTAAGT
12JKBNM1_UP_003_C05_19NOV2003_043 12JKBNM1 Brassica napus cDNA 5', mRNA sequence.
CN727889.1:377-396
ATTAGATAGGTTTATCTATCTAAAGCCTAA377GGATTTCAAACGAAGCCATTTAGGCAAAATCTTTTCTGAATTTTCTAAGT
12JKBNM1_UP_003_D08_19NOV2003_058 12JKBNM1 Brassica napus cDNA 5', mRNA sequence.
CN727904.1:387-406
ATTAGATAGGTTTATCTATCTAAAGCCTAA387GGATTTCAAACGAAGCCATTTAGGCAAAATCTTTTCTGAATTTTCTAAGT
78-E022824-021-016-K19-frev ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022K1916Q, mRNA sequence.
CX189236.1:362-381
ATTAGATAGGTTTATCTATCTAAAGCCTAA362GGATTTCAAACGAAGCCATTTAGGTAAAATCTTTTCTGAATTTTCTAAGT
65-E019365-021-009-B17-T7R ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022B179Q, mRNA sequence.
CX190468.1:307-326
ATTAGATAGGGTTATCTATCTAAAGCCTAA307GGATTTCAAACGAAGCCATTTAGGCAAAATCTTTTCTGGATTTTCTAAGT
49-E010651-021-004-A14-T7R ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022A144Q, mRNA sequence.
CX191812.1:375-394
ATTAGATAGGTTTATCTATCTAAAGCCTAA375GGATTTCAAACGAAGCCATTTAGGTAAAATCTTTTCTGAATTTTCTAAGT
22-E023031-021-019-K06-frev ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022K0619Q, mRNA sequence.
CX194285.1:335-354
ATTAGATAGGTTTATCTATCTAAAGCCTAA335GGATTTCAAACGAAGCCATTTAGGCAAAATCTTTTCTGGATTTTCTAAGT
Brassica oleracea var. viridis mRNA, clone: KALE-023H10, 5' end sequence.
DK464518.1:387-406
ATTAGATAGGTTTATCTATCTAAAGCCTAA387GGATTTCAAACGAAGCCATTTAGGTAAAATCTTTTCTGAATTTTCTAAGT
Brassica oleracea var. viridis mRNA, clone: KALE-023H10, 3' end sequence.
DK524132.1:387-406
ATTAGATAGGTTTATCTATCTAAAGCCTAA387GGATTTCAAACGAAGCCATTTAGGTAAAATCTTTTCTGAATTTTCTAAGT
13JKBNM2_UP_025_A02_15DEC2003_016 13JKBNM2 Brassica napus cDNA 5', mRNA sequence.
ES265319.1:352-371
ATTAGATAGGTTTATCTATCTAAAGCCTAA352GGATTTCAAACGAAGCCATTTAGGCAAAATCTTTTCTGGATTTTCTAAGT
44JK5DM_UP_009_B10_26MAY2004_078 44JK5DM Brassica napus cDNA 5', mRNA sequence.
ES266088.1:351-370
ATTAGATAGGTTTATCTATCTAAAGCCTAA351GGATTTCAAACGAAGCCATTTAGGCAAAATCTTTTCTGGATTTTCTAAGT
JKBNM3_T7_003_D06_23JAN2004_042 JKBNM3 Brassica napus cDNA 3', mRNA sequence.
ES270214.1:304-323
ATTAGATAGGTTTATCTATCTAAAGCCTAA304GGATTTCAAACGAAGCCATTTAGGCAAAATCTTTTCTGGATTTTCTAAGT
44JK5DM_UP_015_F12_02JUL2006_086 Brassica napus 44JK5DM Brassica napus cDNA 5', mRNA sequence.
ES983548.1:356-375
ATTAGATAGGTTTATCTATCTAAAGCCTAA356GGATTTCAAACGAAGCCATTTAGGCAAAATCTTTTCTGGATTTTCTAAGT
BR051683 pollen cDNA library KBPL Brassica rapa subsp. pekinensis cDNA clone KBPL-38H02 5', mRNA sequence.
EX067039.1:223-242
ATTAGATAGGTTTATCTATCTAAAGCCTAA223GGATTTCAAACGAAGCCATTTAGGCAAAATCTTTTCTGGATTTTCTAAGT
13JKBNM2_UP_032_F10_28SEPT2007_070 13JKBNM2 Brassica napus cDNA 5', mRNA sequence.
GR436621.1:360-379
ATTAGATAGGTTTATCTATCTAAAGCCTAA360GGATTTCAAACGAAGCCATTTAGGCAAAATCTTTTCTGGATTTTCTAAGT
13JKBNM2_UP_038_G08_28SEPT2007_052 13JKBNM2 Brassica napus cDNA 5', mRNA sequence.
GR437187.1:385-404
ATTAGATAGGTTTATCTATCTAAAGCCTAA385GGATTTCAAACGAAGCCATTTAGGCAAAATCTTTTCTGAATTTTCTAAGT
13JKBNM2_UP_051_F08_26SEPT2007_054 13JKBNM2 Brassica napus cDNA 5', mRNA sequence.
GR438188.1:359-378
ATTAGATAGGTTTATCTATCTAAAGCCTAA359GGATTTCAAACGAAGCCATTTAGGCAAAATCTTTTCTGGATTTTCTAAGT
13JKBNM2_UP_052_G02_26SEPT2007_004 13JKBNM2 Brassica napus cDNA 5', mRNA sequence.
GR438274.1:346-365
ATTAGATAGGTTTATCTATCTAAAGCCTAA346GGATTTCAAACGAAGCCATTTAGGCAAAATCTTTTCTGGATTTTCTAAGT
13JKBNM2_UP_056_D08_02OCT2007_058 13JKBNM2 Brassica napus cDNA 5', mRNA sequence.
GR438594.1:359-378
ATTAGATAGGTTTATCTATCTAAAGCCTAA359GGATTTCAAACGAAGCCATTTAGGCAAAATCTTTTCTGGATTTTCTAAGT
13JKBNM2_UP_061_A05_1OCT2007_047 13JKBNM2 Brassica napus cDNA 5', mRNA sequence.
GR439003.1:351-370
ATTAGATAGGTTTATCTATCTAAAGCCTAA351GGATTTCAAACGAAGCCATTTAGGCAAAATCTTTTCTGGATTTTCTAAGT
BNAPO1GH_T3_008_A06_15JUN2007_048 BNAPO1GH Brassica napus cDNA 5', mRNA sequence.
GR450782.1:323-342
ATTAGATAGGTTTATCTATCTAAAGCCTAA323GGATTTCAAACGAAGCCATTTAGGCAAAATCTTTTCTGGATTTTCTAAGT
BNAPO1GH_T3_011_B10_15JUN2007_078 BNAPO1GH Brassica napus cDNA 5', mRNA sequence.
GR451074.1:338-357
ATTAGATAGGTTTATCTATCTAAAGCCTAA338GGATTTCAAACGAAGCCATTTAGGCAAAATCTTTTCTGGATTTTCTAAGT
BNAPO1GH_T3_012_A06_15JUN2007_048 BNAPO1GH Brassica napus cDNA 5', mRNA sequence.
GR451152.1:338-357
ATTAGATAGGTTTATCTATCTAAAGCCTAA338GGATTTCAAACGAAGCCATTTAGGCAAAATCTTTTCTGGATTTTCTAAGT
Brassica napus cultivar Xiang5A chromosome 9.
CP123884.1:54905372-54905391
ATTAGATAGGTTTATCTATCTAAAGCCTAA54905372GGATTTCAAACGAAGCCATTTAGGCAAAATCTTTTCTGAATTTTCTAAGT
Brassica rapa pollen coat protein homolog (BAN103) gene, complete cds.
U77666.1:2301-2320
ATTAGATAGGTTTATCTATCTAAAGCCTAA2301GGATTTCAAACGAAGCCATTTAGGCAAAATGCTTTTCTGGATTTTCTAAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AATGGCTTCGTTTGAAATCC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AATGGCTTCGTTTGAAATCC | format : html | download : | debug :

0.008 | 0.008 | search_start;
0.779 | 0.771 | search_plus_done; http://172.18.8.135:50400/match?q=AATGGCTTCGTTTGAAATCC&k=0&no_gap=0&offset=0&limit=50
2.933 | 2.154 | search_minus_done; http://172.18.8.135:50400/match?q=GGATTTCAAACGAAGCCATT&k=0&no_gap=0&offset=0&limit=37
2.958 | 0.025 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).