GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 15:46:16, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Capsicum annuum MGMT_Contig4683, mRNA sequence.
JW054927.1:709-728
AGAAGAAGAAGAAGAGGGGATTTTGAGATT709AATGGGCTTCAACGATTCAAAATCCGTGGGTTTTGGTGAGATAGAAATAT
Geum urbanum genome assembly, chromosome: 2.
OX326998.1:17827912-17827931
ACGGGCTCTACAACAACAAGCACCAACTCT17827912AATGGGCTTCAACGATTCAAGTCCGAGTATGATATTATCATCTCCGATCA
Beris morrisii genome assembly, chromosome: 4.
OX638313.1:63880594-63880613
GGGCTGCGGCACCAAAATGTTAAGCCCCGT63880594AATGGGCTTCAACGATTCAACGAATACAATGTTAAGTCCCGGACTCGGCT
BJ03007H01 BJ03 Capsicum annuum cDNA 5', mRNA sequence.
CO910566.1:117-136
ATATTTCTATCTCACCAAAACCCACGGATT117TTGAATCGTTGAAGCCCATTAATCTCAAAATCCCCTCTTCTTCTTCTTCT
KS15003D01 KS15 Capsicum annuum cDNA, mRNA sequence.
GD063645.1:80-99
ATATTTCTATCTCACCAAAACCCACGGATT80TTGAATCGTTGAAGCCCATTAATCTCAAAATCCCCTCTTCTTCTTCTTCT
Capsicum annuum Takanotsume DNA, chromosome 1, sequence.
AP026696.1:198320432-198320451
ATATTTCTATCTCACCAAAACCCACGGATT198320432TTGAATCGTTGAAGCCCATTAATCTCAAAATCCCCTCTTCTTCTTCTTCT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 1.
CP124731.1:197505317-197505336
ATATTTCTATCTCACCAAAACCCACGGATT197505317TTGAATCGTTGAAGCCCATTAATCTCAAAATCCCCTCTTCTTCTTCTTCT
Beris morrisii genome assembly, chromosome: 3.
OX638312.1:56554418-56554437
CTGATGGTAACGTAACTAATACTGTAATCG56554418TTGAATCGTTGAAGCCCATTACGGGGCTTAACATTACAACACGTAAGTTG
Beris morrisii genome assembly, chromosome: 3.
OX638312.1:63787366-63787385
ATTCCAATCCGGCGCTTAACATTTTATTCA63787366TTGAATCGTTGAAGCCCATTACGGGGCTTAACAAGGACTGTTCAAATTCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AATGGGCTTCAACGATTCAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AATGGGCTTCAACGATTCAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.110 | 0.101 | search_plus_done; http://172.18.8.135:50400/match?q=AATGGGCTTCAACGATTCAA&k=0&no_gap=0&offset=0&limit=50
0.364 | 0.253 | search_minus_done; http://172.18.8.135:50400/match?q=TTGAATCGTTGAAGCCCATT&k=0&no_gap=0&offset=0&limit=47
0.368 | 0.004 | cgi_end;

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