GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-14 21:22:18, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Gymnoscopelus microlampas genome assembly, chromosome: 7.
OY732709.1:28423153-28423172
AGCTTGAACAAGCTTCTTCCTGTCATAAAT28423153AATGGGTACTTTGGTGCTGCAAATGTCTCTCTCTCTGTGCGTAGTGGCTA
Sequence 9 from patent US 6825397.
AR612361.1:576-595
GCTTTTGTCCCTCCACCCTATCATCACCAC576AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
JP 2002529096-A/7: Transcription activator LEC1 nucleic acid, polypeptide and utilization thereof.
BD242759.1:576-595
GCTTTTGTCCCTCCACCCTATCATCACCAC576AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 271 from patent US 7157621.
EA053517.1:576-595
GCTTTTGTCCCTCCACCCTATCATCACCAC576AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 9 from patent US 7166765.
EA059765.1:576-595
GCTTTTGTCCCTCCACCCTATCATCACCAC576AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 9 from patent US 7220894.
EA133219.1:576-595
GCTTTTGTCCCTCCACCCTATCATCACCAC576AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 141 from patent US 7294759.
EA317402.1:576-595
GCTTTTGTCCCTCCACCCTATCATCACCAC576AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 4069 from Patent WO2009037279.
GN099288.1:532-551
GCTTTTGTCCCTCCACCCTATCATCACCAC532AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 4071 from Patent WO2009037279.
GN099290.1:532-551
GCTTTTGTGCCTCCACCCTATCATCACCAC532AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 271 from patent US 8785726.
HK037559.1:576-595
GCTTTTGTCCCTCCACCCTATCATCACCAC576AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 4069 from patent US 8664475.
HK288798.1:532-551
GCTTTTGTCCCTCCACCCTATCATCACCAC532AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 4071 from patent US 8664475.
HK288799.1:532-551
GCTTTTGTGCCTCCACCCTATCATCACCAC532AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 27507 from patent US 9012723.
HK591161.1:691-710
GCTTTTGTCCCTCCACCCTATCATCACCAC691AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 14625 from patent US 9029636.
HK923688.1:583-602
GCTTTTGTCCCTCCACCCTATCATCACCAC583AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 15 from Patent WO2013096562.
JB750620.1:576-595
GCTTTTGTCCCTCCACCCTATCATCACCAC576AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 23 from Patent WO2013096562.
JB750628.1:3370-3389
GCTTTTGTCCCTCCACCCTATCATCACCAC3370AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 24 from Patent WO2013096562.
JB750629.1:553-572
GCTTTTGTCCCTCCACCCTATCATCACCAC553AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 50 from Patent WO2013096562.
JB750655.1:9828-9847
GCTTTTGTCCCTCCACCCTATCATCACCAC9828AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 56 from Patent WO2013096562.
JB750661.1:12354-12373
GCTTTTGTCCCTCCACCCTATCATCACCAC12354AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 61 from Patent WO2013096562.
JB750666.1:12384-12403
GCTTTTGTCCCTCCACCCTATCATCACCAC12384AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 98 from Patent WO2013096562.
JB750703.1:11838-11857
GCTTTTGTCCCTCCACCCTATCATCACCAC11838AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 54 from Patent WO2015017510.
JD589757.1:576-595
GCTTTTGTCCCTCCACCCTATCATCACCAC576AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 55 from Patent WO2015017510.
JD589758.1:532-551
GCTTTTGTCCCTCCACCCTATCATCACCAC532AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 62 from Patent WO2015017510.
JD589765.1:3370-3389
GCTTTTGTCCCTCCACCCTATCATCACCAC3370AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 63 from Patent WO2015017510.
JD589766.1:553-572
GCTTTTGTCCCTCCACCCTATCATCACCAC553AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 76 from Patent WO2015017510.
JD589779.1:9828-9847
GCTTTTGTCCCTCCACCCTATCATCACCAC9828AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 78 from Patent WO2015017510.
JD589781.1:11838-11857
GCTTTTGTCCCTCCACCCTATCATCACCAC11838AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 82 from Patent WO2015017510.
JD589785.1:553-572
GCTTTTGTCCCTCCACCCTATCATCACCAC553AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 92 from Patent WO2015017510.
JD589795.1:576-595
GCTTTTGTCCCTCCACCCTATCATCACCAC576AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 98 from Patent WO2015017510.
JD589801.1:553-572
GCTTTTGTCCCTCCACCCTATCATCACCAC553AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 15 from patent US 10036030.
MI927052.1:576-595
GCTTTTGTCCCTCCACCCTATCATCACCAC576AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 23 from patent US 10036030.
MI927055.1:3370-3389
GCTTTTGTCCCTCCACCCTATCATCACCAC3370AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 24 from patent US 10036030.
MI927056.1:553-572
GCTTTTGTCCCTCCACCCTATCATCACCAC553AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 50 from patent US 10036030.
MI927076.1:9828-9847
GCTTTTGTCCCTCCACCCTATCATCACCAC9828AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 56 from patent US 10036030.
MI927081.1:12354-12373
GCTTTTGTCCCTCCACCCTATCATCACCAC12354AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 61 from patent US 10036030.
MI927085.1:12384-12403
GCTTTTGTCCCTCCACCCTATCATCACCAC12384AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 98 from patent US 10036030.
MI927118.1:11838-11857
GCTTTTGTCCCTCCACCCTATCATCACCAC11838AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 15 from patent US 10876128.
MX173724.1:576-595
GCTTTTGTCCCTCCACCCTATCATCACCAC576AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 23 from patent US 10876128.
MX173727.1:3370-3389
GCTTTTGTCCCTCCACCCTATCATCACCAC3370AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 24 from patent US 10876128.
MX173728.1:553-572
GCTTTTGTCCCTCCACCCTATCATCACCAC553AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 50 from patent US 10876128.
MX173748.1:9828-9847
GCTTTTGTCCCTCCACCCTATCATCACCAC9828AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 56 from patent US 10876128.
MX173753.1:12354-12373
GCTTTTGTCCCTCCACCCTATCATCACCAC12354AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 61 from patent US 10876128.
MX173757.1:12384-12403
GCTTTTGTCCCTCCACCCTATCATCACCAC12384AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 98 from patent US 10876128.
MX173790.1:11838-11857
GCTTTTGTCCCTCCACCCTATCATCACCAC11838AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 15 from patent US 11319549.
OO148800.1:576-595
GCTTTTGTCCCTCCACCCTATCATCACCAC576AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 23 from patent US 11319549.
OO148803.1:3370-3389
GCTTTTGTCCCTCCACCCTATCATCACCAC3370AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 24 from patent US 11319549.
OO148804.1:553-572
GCTTTTGTCCCTCCACCCTATCATCACCAC553AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 50 from patent US 11319549.
OO148824.1:9828-9847
GCTTTTGTCCCTCCACCCTATCATCACCAC9828AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 56 from patent US 11319549.
OO148829.1:12354-12373
GCTTTTGTCCCTCCACCCTATCATCACCAC12354AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 61 from patent US 11319549.
OO148833.1:12384-12403
GCTTTTGTCCCTCCACCCTATCATCACCAC12384AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Sequence 98 from patent US 11319549.
OO148866.1:11838-11857
GCTTTTGTCCCTCCACCCTATCATCACCAC11838AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
sad87a07.y1 Gm-c1055 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1055-2342 5' similar to TR:O81130 O81130 CCAAT-BOX BINDING FACTOR HAP3 HOMOLOG. [1], mRNA sequence.
BG653330.1:204-223
GCTTTTGTCCCTCCACCCTATCATCACCAC204AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
sah27d01.y1 Gm-c1036 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1036-2474 5' similar to TR:O81130 O81130 CCAAT-BOX BINDING FACTOR HAP3 HOMOLOG. [1], mRNA sequence.
BM094268.1:285-304
GCTTTTGTGCCTCCACCCTATCATCACCAC285AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
sak15a07.y1 Gm-c1075 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1075-3085 5', mRNA sequence.
BM270583.1:61-80
GCTTTTGTGCCTCCACCCTATCATCACCAC61AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
sak08b06.y1 Gm-c1075 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1075-2364 5' similar to TR:O81130 O81130 CCAAT-BOX BINDING FACTOR HAP3 HOMOLOG. [1], mRNA sequence.
BM271333.1:232-251
GCTTTTGTGCCTCCACCCTATCATCACCAC232AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
sat17b11.y1 Gm-c1036 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1036-13894 5' similar to TR:O81130 O81130 CCAAT-BOX BINDING FACTOR HAP3 HOMOLOG. [1], mRNA sequence.
CA801742.1:546-565
GCTTTTGTGCCTCCACCCTATCATCACCAC546AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
sau55g04.y1 Gm-c1071 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1071-4927 5' similar to TR:O81130 O81130 CCAAT-BOX BINDING FACTOR HAP3 HOMOLOG. [1], mRNA sequence.
CA935541.1:561-580
GCTTTTGTCCCTCCACCCTATCATCACCAC561AATGGGTACTTTGGTGCTGCCATGCCCATGGGG
GLLE012TF JCVI-SOY1 Glycine max cDNA 5', mRNA sequence.
FG992070.1:582-601
GCTTTTGTGCCTCCACCCTATCATCACCAC582AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
GLPAV53TF JCVI-SOY1 Glycine max cDNA 5', mRNA sequence.
FK003018.1:578-597
GCTTTTGTGCCTCCACCCTATCATCACCAC578AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
ocpsga0_0139_F07.ab1 Soybean immature seed full-length-enriched cDNA library Glycine max cDNA, mRNA sequence.
HO019321.1:536-555
GCTTTTGTGCCTCCACCCTATCATCACCAC536AATGGGTACTTTGGTGCTGCCATGCCCATGGGGAC
ocpsga0_0238_C06.ab1 Soybean immature seed full-length-enriched cDNA library Glycine max cDNA, mRNA sequence.
HO027035.1:536-555
GCTTTTGTGCCTCCACCCTATCATCACCAC536AATGGGTACTTTGGTGCTGCCATGCCCATGGG
ocpsga0_0240_A10.ab1 Soybean immature seed full-length-enriched cDNA library Glycine max cDNA, mRNA sequence.
HO027177.1:536-555
GCTTTTGTGCCTCCACCCTATCATCACCAC536AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTAC
ocpsga0_0406_F07.ab1 Soybean immature seed full-length-enriched cDNA library Glycine max cDNA, mRNA sequence.
HO039742.1:536-555
GCTTTTGTGCCTCCACCCTATCATCACCAC536AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACG
GD_TBa227N02.R GD_TBa Glycine dolichocarpa genomic 3', genomic survey sequence.
HN348343.1:589-608
GCTTTTGTGCCACCACCCTATCATCACCAC589AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
GT_DBa100H14.F GT_DBa Glycine tomentella genomic 5', genomic survey sequence.
HN675153.1:164-183
GCTTTTGTGCCACCACCCTATCATCACCAC164AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
GC_Bb040D06.F GC_Bb Glycine cyrtoloba genomic 5', genomic survey sequence.
HN959536.1:164-183
GCTTTTGTGCCACCACCCTATCATCACCAC164AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
GC_Bb121E12.F GC_Bb Glycine cyrtoloba genomic 5', genomic survey sequence.
HN977026.1:164-183
GCTTTTGTGCCACCACCCTATCATCACCAC164AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Soybean clone JCVI-FLGm-5H12 unknown mRNA.
BT090984.1:582-601
GCTTTTGTGCCTCCACCCTATCATCACCAC582AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Glycine max transcription factor LEC1-B (LEC1-B) mRNA, complete cds.
EU088289.1:532-551
GCTTTTGTCCCTCCACCCTATCATCACCAC532AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Glycine latifolia transcription factor LEC1-B (LEC1-B) gene, complete cds.
EU088291.1:553-572
GCTTTTGTCCCTCCACCCTATCATCACCAC553AATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGC
Aporophyla nigra genome assembly, chromosome: 18.
OX382309.1:21730799-21730818
AACACGTTTGGGGCAACTTAGTAATCGTAG21730799AATGGGTACTTTGGTGCTGCTATTACAATTGTATTTCTCCGCCCTTACCG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AATGGGTACTTTGGTGCTGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AATGGGTACTTTGGTGCTGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
2.670 | 2.662 | search_plus_done; http://172.18.8.135:50400/match?q=AATGGGTACTTTGGTGCTGC&k=0&no_gap=0&offset=0&limit=50
2.734 | 0.063 | search_minus_done; http://172.18.8.135:50400/match?q=GCAGCACCAAAGTACCCATT&k=0&no_gap=0&offset=0&limit=0
2.734 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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