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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:24:41, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Danio rerio strain T5D chromosome 5.
CP068739.1:28004572-28004591
CCAGCAGAGAGTTTTTTTTTGCTTTTTCTT28004572AATGTTTTCCCACTTGGGGTAGTTTGTTTTGCTGTTTATTTTATTTTATT
Danio rerio strain Tubingen chromosome 5.
CP137042.1:29067006-29067025
CCAGCAGAGAGTTTTTTTTTGCTTTTTCTT29067006AATGTTTTCCCACTTGGGGTAGTTTGTTTTGCTGTTTATTTTATTTTATT
Zebrafish DNA sequence from clone CH73-195I19 in linkage group 5.
FP015972.7:98264-98283
CCAGCAGAGAGTTTTTTTTTGCTTTTTCTT98264AATGTTTTCCCACTTGGGGTAGTTTGTTTTGCTGTTTATTTTATTTTATT
Danio rerio genome assembly, chromosome: 5.
LR812042.1:30501456-30501475
CCAGCAGAGAGTTTTTTTTTGCTTTTTCTT30501456AATGTTTTCCCACTTGGGGTAGTTTGTTTTGCTGTTTATTTTATTTTATT
Danio rerio genome assembly, chromosome: 5.
LR812067.1:28892953-28892972
CCAGCAGAGAGTTTTTTTTTGCTTTTTCTT28892953AATGTTTTCCCACTTGGGGTAGTTTGTTTTGCTGTTTATTTTATTTTATT
Danio rerio strain Cooch Behar (CB) genome assembly, chromosome: 5.
LR812548.1:25678099-25678118
TGCCAGCAGAGAGTTTTTTTGCCTTTTCTT25678099AATGTTTTCCCACTTGGGGTAGTTTGTTTTGGTGTTTATTTTATTTTATT
Danio rerio strain Nadia (NA) genome assembly, chromosome: 5.
LR812573.1:28183709-28183728
GCCAGCCGAGAGTATTTTTGCCTTTTTTTT28183709AATGTTTTCCCACTTGGGGTAGTTTGTTTTACTGTTTATTTTATTTTATT
Danio rerio genome assembly, chromosome: 5.
LR812598.1:26021726-26021745
GCCAGCCGAGAGTATTTTTGCCTTTTTTTT26021726AATGTTTTCCCACTTGGGGTAGTTTGTTTTACTGTTTATTTTATTTTATT
Danio rerio genome assembly, chromosome: 5.
OX063294.1:29150669-29150688
CCAGCAGAGAGTTTTTTTTTGCTTTTTCTT29150669AATGTTTTCCCACTTGGGGTAGTTTGTTTTGCTGTTTATTTTATTTTATT
Arachis hypogaea cultivar Shitouqi chromosome A10.
CP030992.1:49460912-49460931
TGGTCTGAATGGTGGGAAGTAAAGTAATTC49460912AATGTTTTCCCACTTGGGGTGTGGCGCCAAGTGTAGGAAGAGGCGCCAAT
Zebrafish DNA sequence from clone CH211-166O17 in linkage group 5 Contains the tnc gene for tenascin C.
BX004856.5:40604-40623
AATAAAATAAAATAAACAGCAAAACAAACT40604ACCCCAAGTGGGAAAACATTAAGAAAAAGCAAAAAAAAACTCTCTGCTGG
Zebrafish DNA sequence from clone DKEY-265F1.
CT737232.19:96582-96601
AATGAAATAAAATAAACAGCAAAACAAACT96582ACCCCAAGTGGGAAAACATTAAGAAAAGGCAAAAAAACTCTCTGCTGGCA
Zebrafish DNA sequence from clone CH73-275D11 in linkage group 5.
FP017198.18:88878-88897
AATAAAATAAAATAAACAGCAAAACAAACT88878ACCCCAAGTGGGAAAACATTAAGAAAAAGCAAAAAAAAACTCTCTGCTGG
Danio aesculapii genome assembly, chromosome: 5.
LR812498.1:15440678-15440697
ATAAAATAAAACTAAAAGACAACAAAATCA15440678ACCCCAAGTGGGAAAACATTCACTAAAAGCAGAGGTGGGTAGTTTCCAAA
Arachis hypogaea cultivar Shitouqi chromosome A03.
CP030985.1:93090606-93090625
ATTAGCGCCTCTTCCCACGCTAGGCGCCAC93090606ACCCCAAGTGGGAAAACATTGAATTGCTTTTCTTCCCACCATTCGGACCA
Quercus variabilis isolate HB chromosome 8b.
CP129440.1:57423025-57423044
ATAAACAAAAAAATTTATTCACGAATGTAG57423025ACCCCAAGTGGGAAAACATTTTCTTTTGGATCATTTGGAAGCCTTAAATA
Solanum verrucosum cultivar 11H23 chromosome 2.
CP133613.1:18894277-18894296
TCAACCTGTCGTAAGAGGCACTCATACTAA18894277ACCCCAAGTGGGAAAACATTATTTACTAGAATGAAAAATGTTGAACAATA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AATGTTTTCCCACTTGGGGT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AATGTTTTCCCACTTGGGGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.203 | 0.194 | search_plus_done; http://172.18.8.135:50400/match?q=AATGTTTTCCCACTTGGGGT&k=0&no_gap=0&offset=0&limit=50
0.325 | 0.122 | search_minus_done; http://172.18.8.135:50400/match?q=ACCCCAAGTGGGAAAACATT&k=0&no_gap=0&offset=0&limit=40
0.330 | 0.005 | cgi_end;

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