GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 11:48:37, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:19942432-19942451
TGCTTGTTTTCTCCGTAAAATCTCAACGGG19942432AATTCCGATTGCGACAAAACTAAAGACATTTCAAACGAGAACATGGAGAA
Hordeum bulbosum genome assembly, chromosome: 3H_3.
OY737476.1:320854418-320854437
CTATAGGTTTAACGATTCGGGTATCAAACA320854418AATTCCGATTGCGACAAAACTTGGCAAGCGGCCTACCTATAAAATATAAG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH085A21, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces.
AC189613.1:16486-16505
GTAGCTTGAATCTTGTACGAAACTATCTTC16486GTTTTGTCGCAATCGGAATTGTCAAATTGAGATTTTATGAAGAAAAAAAG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 2H.
OX459992.1:114346260-114346279
TTATTTTAATATAGGTAGGACGCCTGTCAA114346260GTTTTGTCGCAATCGGAATTCGTGTGGTACCCGAACGGTCGACCGTAGCG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 2H.
OX460048.1:118036580-118036599
TTATTTTAATATAGGTAGGACGCCTGTCAA118036580GTTTTGTCGCAATCGGAATTCGTGTGGTACCCGAACGGTCGACCGTAGCG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 2H.
OX638771.1:115864239-115864258
TTATTTTAATATAGGTAGGACGCCTGTCAA115864239GTTTTGTCGCAATCGGAATTCGTGTGGTACCCGAACGGTCGACCGTAGCG
Hordeum bulbosum genome assembly, chromosome: 1H_3.
OY737625.1:269160037-269160056
TTATTTTAATATAGGTAGGCCGCCTGTCAA269160037GTTTTGTCGCAATCGGAATTCGTTCGATACCCGAACCGTTAAACCTATAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AATTCCGATTGCGACAAAAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AATTCCGATTGCGACAAAAC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.116 | 0.107 | search_plus_done; http://172.18.8.135:50400/match?q=AATTCCGATTGCGACAAAAC&k=0&no_gap=0&offset=0&limit=50
0.141 | 0.025 | search_minus_done; http://172.18.8.135:50400/match?q=GTTTTGTCGCAATCGGAATT&k=0&no_gap=0&offset=0&limit=48
0.144 | 0.003 | cgi_end;

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