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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:04:20, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Malus hybrid cultivar cultivar Flame chromosome 4.
CP141913.1:8502465-8502487
TGGAGGACGATAGGAGTGGAGCGTCCCAAA8502465AATTGGATGAGCTTGGTCTTGTGGACACACTCTTTCACTGATTGTTGTTGCTG
Malus hybrid cultivar cultivar Flame chromosome 4.
CP141930.1:9300662-9300684
TGGAGGACGATAGGAGTGGAGCGTCCCAAA9300662AATTGGATGAGCTTGGTCTTGTGGACACACTCTTTCACTGATTGTTGTTGCTG
Malus hybrid cultivar cultivar Royalty chromosome 4.
CP141956.1:8587946-8587968
TGGAGGACGATAGGAGTGGAGCGTCCCAAA8587946AATTGGATGAGCTTGGTCTTGTGGACACACTCTTTCACTGATTGTTGTTGCTG
Malus hybrid cultivar cultivar Royalty chromosome 4.
CP141973.1:8483398-8483420
TGGAGGACGATAGGAGTGGAGCGTCCCAAA8483398AATTGGATGAGCTTGGTCTTGTGGACACACTCTTTCACTGATTGTTGTTGCTG
Malus hybrid cultivar cultivar SH6 chromosome 4.
CP143361.1:8861837-8861859
TGGAGGACGATAGGAGTGGAGCGTCCCAAA8861837AATTGGATGAGCTTGGTCTTGTGGACACACTCTTTCACTGATTGTTGTTGCTG
Malus hybrid cultivar cultivar SH6 chromosome 6.
CP143363.1:16748273-16748295
TGGAGGACGATAGGCGCGGAGCGTCCCAAG16748273AATTGGATGAGCTTGGTCTTGTGCACGCACTCTTTCACTGATTGTGGTTGCTG
Malus hybrid cultivar cultivar SH6 chromosome 4.
CP143378.1:8139019-8139041
TGGAGGACGATAGGAGTGGAGCGTCCCAAA8139019AATTGGATGAGCTTGGTCTTGTGGACGCACTCTTTCACCGATTGTTGTTGCTG
Malus sylvestris genome assembly, chromosome: 4.
OU696506.1:9205258-9205280
TGGAGGACGATAGGAGTGGAGCGTCCCAAA9205258AATTGGATGAGCTTGGTCTTGTGGACACACTCTTTCACTGATTGTTGTTGCTG
Malus sylvestris genome assembly, chromosome: 6.
OU696508.1:17154424-17154446
TGGAGGACGATAGGCGCGGAGCGTCCCAAG17154424AATTGGATGAGCTTGGTCTTGTGCACGCACTCTTTCACTGATTGTGGTTGCTG
Malus domestica genome assembly, chromosome: 4.
OU696680.1:9141656-9141678
TGGAGGACGATAGGAGTGGAGCGTCCCAAA9141656AATTGGATGAGCTTGGTCTTGTGGACACACTCTTTCACTGATTGTTGTTGCTG
Malus domestica genome assembly, chromosome: 6.
OU696682.1:16939115-16939137
TGGAGGACGATAGGCGCGGAGCGTCCCAAG16939115AATTGGATGAGCTTGGTCTTGTGCACGCACTCTTTCACTGATTGTGGTTGCTG
Malus domestica genome assembly, chromosome: 4.
OU744545.1:9080986-9081008
TGGAGGACGATAGGAGTGGAGCGTCCCAAA9080986AATTGGATGAGCTTGGTCTTGTGGACACACTCTTTCACTGATTGTTGTTGCTG
Malus domestica genome assembly, chromosome: 6.
OU744547.1:16857726-16857748
TGGAGGACGATAGGCGCGGAGCGTCCCAAG16857726AATTGGATGAGCTTGGTCTTGTGCACGCACTCTTTCACTGATTGTGGTTGCTG
Malus domestica genome assembly, chromosome: 4.
OU744956.1:8997591-8997613
TGGAGGACGATAGGAGTGGAGCGTCCCAAA8997591AATTGGATGAGCTTGGTCTTGTGGACACACTCTTTCACTGATTGTTGTTGCTG
Malus domestica genome assembly, chromosome: 4.
OU744994.1:9215829-9215851
TGGAGGACGATAGGAGTGGAGCGTCCCAAA9215829AATTGGATGAGCTTGGTCTTGTGGACACACTCTTTCACTGATTGTTGTTGCTG
Malus domestica genome assembly, chromosome: 6.
OU744996.1:12992304-12992326
TGGAGGACGATAGGCGCGGAGCGTCCCAAG12992304AATTGGATGAGCTTGGTCTTGTGCACGCACTCTTTCACTGATTGTGGTTGCTG
Potentilla anserina genome assembly, chromosome: 5.
OW176985.1:8790050-8790072
TGGAGGACGATAGGGGCGGTGCGGCCTAAG8790050AATTGGATGAGCTTGGTCTTGTGGAGACAGTCCTTCACTGACTGTGGCTGCTG
Geum urbanum genome assembly, chromosome: 8.
OX327004.1:45417195-45417217
TGGAGAACAATTGGCGCGGTGCGGCCCAAG45417195AATTGGATGAGCTTGGTCTTGTGAAGACAGTCTTTCACTGACTGCGGCGGTGG
Geum urbanum genome assembly, chromosome: 15.
OX327011.1:35830534-35830556
TGGAGAACAATTGGCGTGGTGCGGCCCAAG35830534AATTGGATGAGCTTGGTCTTGTGAAGACAGTCTTTCACTGACTGCGGCGGTGG
Malus x robusta genome assembly, chromosome: 14.
OY720338.1:13221531-13221553
TGGAGGACGATAGGCGCGGAGCGTCCCAAG13221531AATTGGATGAGCTTGGTCTTGTGCACGCACTCTTTCACTGATTGTGGTTGCTG
Crataegus laevigata genome assembly, chromosome: 7.
OY756944.1:9424496-9424518
TGGAGGACGATAGGCGTGGAGCGTCCCAAA9424496AATTGGATGAGCTTGGTCTTGTGGACGCACTCTTTCACTGATTGTTGTTGCTG
Pyrus communis genome assembly, chromosome: 17.
OY757084.1:6259027-6259049
TGGAGGACGATAGGCGTGGAGCGTCCCAAA6259027AATTGGATGAGCTTGGTCTTGTGGACGCACTCTTTCACTGATTGTTGTTGCTG
Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH063_02148m, 5' end sequence.
AB450734.1:186-208
CAGCAACAACAATCAGTGAAAGAGTGCGTC186CACAAGACCAAGCTCATCCAATTTTTGGGACGCTCCACGCCTATCGTCCTCCA
Pyrus pyrifolia mRNA, clone: NFR1_01_09, 5' end sequence, expressed in fruit.
HX745710.1:186-208
CAGCAACAACAATCAGTGAAAGAGTGCGTC186CACAAGACCAAGCTCATCCAATTTTTGGGACGCTCCACGCCTATCGTCCTCCA
Pyrus pyrifolia mRNA, clone: NFR1_01_12, 5' end sequence, expressed in fruit.
HX745713.1:186-208
CAGCAACAACAATCAGTGAAAGAGTGCGTC186CACAAGACCAAGCTCATCCAATTTTTGGGACGCTCCACGCCTATCGTCCTCCA
Pyrus pyrifolia mRNA, clone: NFR1_01_14, 5' end sequence, expressed in fruit.
HX745715.1:186-208
CAGCAACAACAATCAGTGAAAGAGTGCGTC186CACAAGACCAAGCTCATCCAATTTTTGGGACGCTCCACGCCTATCGTCCTCCA
Pyrus pyrifolia mRNA, clone: NFR1_01_27, 5' end sequence, expressed in fruit.
HX745727.1:186-208
CAGCAACAACAATCAGTGAAAGAGTGCGTC186CACAAGACCAAGCTCATCCAATTTTTGGGACGCTCCACGCCTATCGTCCTCCA
Pyrus pyrifolia mRNA, clone: NFR1_01_34, 5' end sequence, expressed in fruit.
HX745733.1:186-208
CAGCAACAACAATCAGTGAAAGAGTGCGTC186CACAAGACCAAGCTCATCCAATTTTTGGGACGCTCCACGCCTATCGTCCTCCA
Pyrus pyrifolia mRNA, clone: NFR1_01_48, 5' end sequence, expressed in fruit.
HX745746.1:186-208
CAGCAACAACAATCAGTGAAAGAGTGCGTC186CACAAGACCAAGCTCATCCAATTTTTGGGACGCTCCACGCCTATCGTCCTCCA
Pyrus pyrifolia mRNA, clone: NFR1_06_06, 5' end sequence, expressed in fruit.
HX746146.1:186-208
CAGCAACAACAATCAGTGAAAGAGTGCGTC186CACAAGACCAAGCTCATCCAATTTTTGGGACG
TSA: Pyrus pyrifolia mRNA, contig: contig_1448.
FX432614.1:186-208
CAGCAACAACAATCAGTGAAAGAGTGCGTC186CACAAGACCAAGCTCATCCAATTTTTGGGACGCTCCACGCCTATCGTCCTCCA
TSA: Pyrus x bretschneideri Unigene30248_XinShao mRNA sequence.
JR623303.1:258-280
CAGCAACAACAATCAGTGAAAGAGTGCGTC258CACAAGACCAAGCTCATCCAATTTTTGGGACGCTCCACGCCTATCGTCCTCCA
Malus hybrid cultivar cultivar Flame chromosome 6.
CP141915.1:17637022-17637044
CAGCAACCACAATCAGTGAAAGAGTGCGTG17637022CACAAGACCAAGCTCATCCAATTCTTGGGACGCTCCGCGCCTATCGTCCTCCA
Malus hybrid cultivar cultivar Flame chromosome 6.
CP141932.1:18590504-18590526
CAGCAACCACAATCAGTGAAAGAGTGCGTG18590504CACAAGACCAAGCTCATCCAATTCTTGGGACGCTCCGCGCCTATCGTCCTCCA
Malus hybrid cultivar cultivar Royalty chromosome 9.
CP141961.1:17484261-17484283
CAGCAACCACAATCAGTGAAAGAGTGCGTG17484261CACAAGACCAAGCTCATCCAATTCTTGGGACGCTCCGCGCCTATCGTCCTCCA
Malus hybrid cultivar cultivar Royalty chromosome 9.
CP141978.1:16991493-16991515
CAGCAACCACAATCAGTGAAAGAGTGCGTG16991493CACAAGACCAAGCTCATCCAATTCTTGGGACGCTCCGCGCCTATCGTCCTCCA
Malus hybrid cultivar cultivar SH6 chromosome 6.
CP143380.1:13731640-13731662
CAGCAACCACAATCAGTGAAAGAGTGCGTG13731640CACAAGACCAAGCTCATCCAATTCTTGGGACGCTCCGCGCCTATCGTCCTCCA
Malus domestica genome assembly, chromosome: 6.
OU744958.1:13944822-13944844
CAGCAACCACAATCAGTGAAAGAGTGCGTG13944822CACAAGACCAAGCTCATCCAATTCTTGGGACGCTCCGCGCCTATCGTCCTCCA
Malus x robusta genome assembly, chromosome: 17.
OY720341.1:16940678-16940700
CAGCAACAACAATCAGTGAAAGAGTGTGTC16940678CACAAGACCAAGCTCATCCAATTTTTGGGACGCTCCACTCCTATCGTCCTCCA
Crataegus laevigata genome assembly, chromosome: 13.
OY756950.1:20398947-20398969
CAGCAACCACAAGCAGTGCAAGAGTGCGTG20398947CACAAGACCAAGCTCATCCAATTCTTGGGACGCTCCGCGCCTGTCGTCCTCCA
Potentilla sterilis genome assembly, chromosome: 7.
OY821760.1:39304881-39304903
CAGCAGCCACAGTCAGTGAAGGAATGTCTT39304881CACAAGACCAAGCTCATCCAATTCTTAGGCCGCACCGCCCCTATCGTCCTCCA
Potentilla sterilis genome assembly, chromosome: 12.
OY821765.1:32414844-32414866
CAGCAGCCACAGTCAGTGAAGGACTGTCTT32414844CACAAGACCAAGCTCATCCAATTCTTAGGCCGCACCGCCCCTATCGTCCTCCA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AATTGGATGAGCTTGGTCTTGTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AATTGGATGAGCTTGGTCTTGTG | format : html | download : | debug : 

0.013 | 0.013 | search_start;
0.148 | 0.134 | search_plus_done; http://172.18.8.135:50400/match?q=AATTGGATGAGCTTGGTCTTGTG&k=0&no_gap=0&offset=0&limit=50
0.867 | 0.720 | search_minus_done; http://172.18.8.135:50400/match?q=CACAAGACCAAGCTCATCCAATT&k=0&no_gap=0&offset=0&limit=28
0.881 | 0.013 | cgi_end;

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