GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 10:35:31, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

ORNL094 Poplar BAC Library Populus trichocarpa genomic similar to Transcription factor, genomic survey sequence.
BH860620.1:656-677
TCTTGGCATTGTCAAATTCTGCAGTTAATT656AATTTAGCTGATAGGTTTTTTCTTTTTTTTTTGGAGGATAAAGTTTTGTCAT
Populus trichocarpa clone Pop1-16J18, complete sequence.
AC149481.1:68219-68240
TCTTGGCATTGTCAAATTCTGCAGTTAATT68219AATTTAGCTGATAGGTTTTTTCTTTTTTTTTTGGAGGATAAAGTTTTGTCAT
Populus trichocarpa clone Pop1-12C14, complete sequence.
AC149541.1:70086-70107
TCTTGGCATTGTCAAATTCTGCAGTTAATT70086AATTTAGCTGATAGGTTTTTTCTTTTTTTTTTGGAGGATAAAGTTTTGTCAT
Populus balsamifera subsp. trichocarpa teosinte-branched-like protein (TB1) gene, complete cds.
AF309092.1:2236-2257
ATGACAAAACTTTATCCTCCAAAAAAAAAA2236GAAAAAACCTATCAGCTAAATTAATTAACTGCAG
Populus nigra genome assembly, chromosome: 10.
OX637681.1:9114387-9114408
TGGCAAAAATTTGTCCTCCAAAAAAAAAAA9114387GAAAAAACCTATCAGCTAAATTAATTAACTGCAGAATTTGACAATGCCAAGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AATTTAGCTGATAGGTTTTTTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AATTTAGCTGATAGGTTTTTTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.092 | 0.084 | search_plus_done; http://172.18.8.135:50400/match?q=AATTTAGCTGATAGGTTTTTTC&k=0&no_gap=0&offset=0&limit=50
0.106 | 0.014 | search_minus_done; http://172.18.8.135:50400/match?q=GAAAAAACCTATCAGCTAAATT&k=0&no_gap=0&offset=0&limit=47
0.107 | 0.001 | cgi_end;

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