GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 19:32:53, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Rana temporaria genome assembly, chromosome: 3.
LR991682.1:359683893-359683912
GAAAATAAAACTGTTACGAAAATACGAACT359683893AATTTGAATATGAAAACTCGCGTCTTATGAATCTTAGCGAATCTACGGAA
Fraxinus pennsylvanica genome assembly, chromosome: 10.
OU503045.2:11462564-11462583
GACTGTGTTCGTGTGTCATATTTTGCTTTT11462564AATTTGAATATGAAAACTCGTTCCACAGTTTTTGACAGGCACTTCTTGAA
Sambucus nigra genome assembly, chromosome: 1.
OX422207.1:251928535-251928554
ATGCATTCATACCTTTATTGAGATCCCTCG251928535AATTTGAATATGAAAACTCGACACATAATCCAATGTAACCTTTAGTCATT
Bellardia pandia genome assembly, chromosome: X.
OU696534.1:13291096-13291115
AAATTTAAGCGCACATTGGCTATGAGTCGA13291096AATTTGAATATGAAAACTCGTCCGCCCGTCCATCTGTTATCCAGCATTCT
Anthophora plumipes genome assembly, chromosome: 4.
OX638114.1:16166582-16166601
ACGCGAATCTAAATCGTTCTCGAAACTCTA16166582AATTTGAATATGAAAACTCGCGAAAAATTGACGTGACTCTAATATGAAAC
Diogma glabrata genome assembly, chromosome: 4.
OY856189.1:1766255-1766274
CAATTTTATGAAAAGAAAAATTTGAATTTG1766255AATTTGAATATGAAAACTCGATGAAAAAATAGTTTCTAAATTGAAAGTGA
Pseudochaenichthys georgianus genome assembly, chromosome: 21.
LR792566.1:27981276-27981295
TCTCTGTGGGCTGTGGGGACGTGTGCAAGA27981276CGAGTTTTCATATTCAAATTCCTTGGGTAAAAATATGACTGACAATAACT
Notothenia rossii genome assembly, chromosome: 2.
OX449112.1:81951786-81951805
TCTCTGTGGGCTGTGGGGACGTGTGCAAGA81951786CGAGTTTTCATATTCAAATTCCTTGGCTAAAAATATGACTGACAATAACT
NGPSN56TR NGPP Nasonia giraulti cDNA, mRNA sequence.
ES629958.1:782-801
TATTATTTGTACAGACAATAATTTAGTAAA782CGAGTTTTCATATTCAAATTTATCTACCCCGATATGTGATAAATCTAAAT
NVPAE68TR NVPA Nasonia vitripennis cDNA, mRNA sequence.
ES633748.1:735-754
TATTATTTGTACAGACAATAATTTAGTAAA735CGAGTTTTCATATTCAAATTTATCTACCCCGATATGTGATAAATCTAAAT
Philereme vetulata genome assembly, chromosome: 12.
OU975429.1:2859278-2859297
AAGATCAAATACGACTTGTCGTATATTATA2859278CGAGTTTTCATATTCAAATTGTTTTATTACTACTTTAGATCATGAGTAAT
Stelis phaeoptera genome assembly, chromosome: 1.
OX030930.1:18102973-18102992
ATATTTCTGCGGGCACGAAGAATTTGAATT18102973CGAGTTTTCATATTCAAATTTACTCATTCGCCTGAAAATTATCCTAATCG
Amphimallon solstitiale genome assembly, chromosome: 8.
OY720682.1:70791561-70791580
CACGACATTATTTTCCTTTTTAGGATTCTG70791561CGAGTTTTCATATTCAAATTTTTGCACTAGGTACTTCTTTAGCAGCCTTT
Xanthorhoe designata genome assembly, chromosome: 13.
OY757043.1:3857968-3857987
AACGACAAATCCCCAACGGCATATCACATT3857968CGAGTTTTCATATTCAAATTCGAGGGCATGGCTCGTTCCGACGGGTAACA
Agrilus biguttatus genome assembly, chromosome: 8.
OY998124.1:1035122-1035141
TACTCTCCCGGCCAAATGACATGGCATAAG1035122CGAGTTTTCATATTCAAATTTGTTTTTAAATGCCCGATCAAGTCCCATTC
Agrilus biguttatus genome assembly, chromosome: 8.
OY998124.1:1035883-1035902
TACGCTCCCGGCCAAATGACATGGCATAAG1035883CGAGTTTTCATATTCAAATTTGTTTTTAAATGCCCGATCAAGTCCCATTC
Philereme transversata genome assembly, chromosome: 1.
OZ004337.1:24286316-24286335
ATACGACTTGTCACACTGTCATAAATTATA24286316CGAGTTTTCATATTCAAATTGGCTTATATACTACTTTAGATCATGTGTAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AATTTGAATATGAAAACTCG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AATTTGAATATGAAAACTCG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.108 | 0.099 | search_plus_done; http://172.18.8.135:50400/match?q=AATTTGAATATGAAAACTCG&k=0&no_gap=0&offset=0&limit=50
0.275 | 0.167 | search_minus_done; http://172.18.8.135:50400/match?q=CGAGTTTTCATATTCAAATT&k=0&no_gap=0&offset=0&limit=44
0.282 | 0.007 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).