GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 07:55:21, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:2529664-2529683
TTCTGAATCAGTGCTTTTCTTCCTAAGAGC2529664AATTTGCGGGCATAACAAAGCAAATGCTGACGAAAGTGATGTTCTGGACT
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:2611875-2611894
TTCTGAATCAGTGCTTTTCTTCCCAAGAGC2611875AATTTGCGGGCATAACAAAGCAAATGCTGACGAAAGTGATGTTCTGGACT
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:2691581-2691600
TTCTGAATCAGTGCTTTTCTTCCCAAGAGC2691581AATTTGCGGGCATAACAAAGCAAATGCTGACGAAAGTGATGTTCTGGACT
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141980.1:2682231-2682250
TTCTGGATCAGTGCTTTTCTTCCCAAGAGC2682231AATTTGCGGGCATAACAAAGCAAATGCTGACGAAAGTGATGTTCTGGACT
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:2598435-2598454
TTCTGAATCAGTGCTTTTCTTCCCAAGAGC2598435AATTTGCGGGCATAACAAAGCAAATGCTGACGAAAGTGATGTTCTGGACT
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143385.1:2610527-2610546
TTCTGAATCAGTGCTTTTCTTCCCAAGAGC2610527AATTTGCGGGCATAACAAAGCAAATGCTGACGAAAGTGATGTTCTGGACT
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:2706145-2706164
TTCTGAATCAGTGCTTTTCTTCCCAAGAGC2706145AATTTGCGGGCATAACAAAGCAAATGCTGACGAAAGTGATGTTCTGGACT
Malus domestica genome assembly, chromosome: 11.
OU696687.1:2694424-2694443
TTCTGAATCAGTGCTTTTCTTCCCAAGAGC2694424AATTTGCGGGCATAACAAAGCAAATGCTGACGAAAGTGATGTTCTGGACT
Malus domestica genome assembly, chromosome: 11.
OU744552.1:2771406-2771425
TTCTGAATCAGTGCTTTTCTTCCCAAGAGC2771406AATTTGCGGGCATAACAAAGCAAATGCTGACGAAAGTGATGTTCTGGACT
Malus domestica genome assembly, chromosome: 11.
OU744963.1:2811358-2811377
TTCTGAATCAGTGCTTTTCTTCCCAAGAGC2811358AATTTGCGGGCATAACAAAGCAAATGCTGACGAAAGTGATGTTCTGGACT
Malus domestica genome assembly, chromosome: 11.
OU745001.1:2755212-2755231
TTCTGAATCAGTGCTTTTCTTCCCAAGAGC2755212AATTTGCGGGCATAACAAAGCAAATGCTGACGAAAGTGATGTTCTGGACT
Notocelia uddmanniana genome assembly, chromosome: 20.
LR991072.1:16661074-16661093
ATCCCGATAACATGGCCGTAGCATCACTGA16661074AATTTGCGGGCATAACAAAGATTATGTCAAGAAGCAATTGACGTGCCGAT
Malus x robusta genome assembly, chromosome: 5.
OY720329.1:38518289-38518308
AGTCCAGAACATCACTTTCGTCAGCATTTG38518289CTTTGTTATGCCCGCAAATTGCTCTTGGGAAGAAAAGCACTGATTCAGAA
Crataegus laevigata genome assembly, chromosome: 6.
OY756943.1:38380570-38380589
AGTCCAGAACATCACTTTCGTCAGCATTTG38380570CTTTGTTATGCCCGCAAATTGCTCTTGGAAAGAAAAGCACTGATCCGGAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/AATTTGCGGGCATAACAAAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : AATTTGCGGGCATAACAAAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.339 | 0.330 | search_plus_done; http://172.18.8.135:50400/match?q=AATTTGCGGGCATAACAAAG&k=0&no_gap=0&offset=0&limit=50
0.433 | 0.094 | search_minus_done; http://172.18.8.135:50400/match?q=CTTTGTTATGCCCGCAAATT&k=0&no_gap=0&offset=0&limit=38
0.434 | 0.001 | cgi_end;

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