GGGenome Help | English

データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-10 00:11:13, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Lotus japonicus genomic DNA, clone: LjT48C01, TM2100.
AP009930.1:16306-16329
TATACACAGCTCATGACATTTTAAAATTAA16306ACAAAATTGGTTATAAGGAGTATCATTAAAAACTGATAAAGAGATATTCAATTA
Lotus japonicus genomic DNA, chromosome 2, clone: LjT45A22, TM0400a.
AP006694.1:60978-61001
TATACACAGCTCATGACATTTTAAAATTAA60978ACAAAATTGGTTATAAGGAGTATCATTAAAAACTGATAAAGAGATATTCAATTA
Lotus japonicus B-129 DNA, chromosome 2, complete sequence.
AP022630.1:71191911-71191934
TATACACAGCTCATGACATTTTAAAATTAA71191911ACAAAATTGGTTATAAGGAGTATCATTAAAAACTGATAAAGAGATATTCAATTA
Lotus japonicus B-129 DNA, chromosome 6, complete sequence.
AP022634.1:47442827-47442850
TATACACAGCTCATGACATTTTAAAATTAA47442827ACAAAATTGGTTATAAGGAGTATCATTAAAAACTGATAAAGAGATATTCAATTA
Lotus japonicus B-129 DNA, chromosome 1, complete sequence.
AP022629.1:8643033-8643056
TAATTGAATATCTCTTTATCAGTTTTTAAT8643033GATACTCCTTATAACCAATTTTGTTTAATTTTAAAATGTCATGAGCTGTGTATA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ACAAAATTGGTTATAAGGAGTATC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ACAAAATTGGTTATAAGGAGTATC | format : html | download : | debug :

0.008 | 0.008 | search_start;
0.392 | 0.384 | search_plus_done; http://172.18.8.135:50400/match?q=ACAAAATTGGTTATAAGGAGTATC&k=0&no_gap=0&offset=0&limit=50
0.517 | 0.125 | search_minus_done; http://172.18.8.135:50400/match?q=GATACTCCTTATAACCAATTTTGT&k=0&no_gap=0&offset=0&limit=46
0.517 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).