GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 07:49:19, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Azospira oryzae isolate b3bb3f0f-f319-47e4-890c-4a1a90e07fc5 genome assembly, chromosome: 3.
OY762500.1:1554104-1554122
ACCCAGTGCAATATCTGAGAAGCGCAAAGG1554104ACAAACAATGAAACTCCTCGTCATCGGTTCCGGCGGCCGCGAGCACGCC
GQ0011.TB_I09 GQ001: Male strobili developmental sequence Picea glauca cDNA clone GQ0011_I09 3', mRNA sequence.
CK442037.2:296-314
GAAGCAACTGTGAACAGAACCGCGCTTCCA296ACAAACAATGAAACTCCTCCACTGCCCAGCTGAGAGAAGAGGCCTTTCC
GQ0013.TB.1_H14 GQ001: Male strobili developmental sequence Picea glauca cDNA clone GQ0013_H14 3', mRNA sequence.
CK442573.2:294-312
GAAGCAACTGTGAACAGAACCGCGCTTCCA294ACAAACAATGAAACTCCTCCACTGCCCAGCTGAGAGAAGAGGCCTTTCC
GQ0015.TB.1_D13 GQ001: Male strobili developmental sequence Picea glauca cDNA clone GQ0015_D13 3', mRNA sequence.
CK443675.2:263-281
GAAGCAACTGTGAACAGAACCGCGCTTCCA263ACAAACAATGAAACTCCTCCACTGCCCAGCTGAGAGAAGAGGCCTTTCC
WS0014.B21_H17 WS-ES-A-1 Picea glauca cDNA clone WS0014_H17 3', mRNA sequence.
CO228338.1:327-345
GAAGCAACTGTGAACAGAACCGCGCTTCCA327ACAAACAATGAAACTCCTCCACTGCCCAGCTGAGAGAAGAGGCCTTTCC
WS0015.B21_K18 WS-ES-A-1 Picea glauca cDNA clone WS0015_K18 3', mRNA sequence.
CO228749.1:331-349
GAAGCAACTGTGAACAGAACCGCGCTTCCA331ACAAACAATGAAACTCCTCCACTGCCCAGCTGAGAGAAGAGGCCTTTCC
WS0016.B21_M14 WS-ES-A-1 Picea glauca cDNA clone WS0016_M14 3', mRNA sequence.
CO229099.1:328-346
GAAGCAACTGTGAACAGAACCGCGCTTCCA328ACAAACAATGAAACTCCTCCACTGCCCAGCTGAGAGAAGAGGCCTTTCC
WS0018.B21_C23 WS-ES-A-1 Picea glauca cDNA clone WS0018_C23 3', mRNA sequence.
CO229518.1:327-345
GAAGCAACTGTGAACAGAACCGCGCTTCCA327ACAAACAATGAAACTCCTCCACTGCCCAGCTGAGAGAAGAGGCCTTTCC
WS0328.C21_I14 WS-MC-N-A-20 Picea glauca cDNA clone WS0328_I14 3, mRNA sequence.
DR556365.1:352-370
GAAGCAACTGTGAACAGAACCGCGCTTCCA352ACAAACAATGAAACTCCTCCACCGAAGGCAAACAAGTCCTCAAATTTGG
WS00741.C21_E12 WS-PS-N-A-8 Picea glauca cDNA clone WS00741_E12 3, mRNA sequence.
DR575681.1:329-347
GAAGCAACTGTGAACAGAACCGCGCTTCCA329ACAAACAATGAAACTCCTCCACTGCCCAGCTGAGAGAAGAGGTCTTC
WS0431.C21_G12 SS-NE-28 Picea sitchensis cDNA clone WS0431_G12 3', mRNA sequence.
FD747080.1:320-338
GAAGCAACTGTGAACAGAACCGCGCTTCCA320ACAAACAATGAAACTCCTCCACTGCCCAGCTGAGAGAAGAGGCCTTTCC
GQ03511.SP6.r_A10 GQ035 - Needles - End of season Picea glauca cDNA clone GQ03511_A10 3', mRNA sequence.
GO365186.1:318-336
GAAGCAACTGTGAACAGAACCGCGCTTCCA318ACAAACAATGAAACTCCTCCACTGCCCAGCTGAGAGAAGAGGCCTTTCC
Solanum dulcamara genome assembly, chromosome: 10.
OX359261.1:15539276-15539294
GGTGCATCCCAGCCCAAGTGTACCCTCAAT15539276ACAAACAATGAAACTCCTCTTGAGATTGATGAATATGCAGTGTGTGTAT
Azospira sp. I09 DNA, complete genome.
AP021844.1:3503246-3503264
ACCCAGTGCAATATCTGAGAAGCGCAAAGG3503246ACAAACAATGAAACTCCTCGTCATCGGTTCCGGCGGCCGCGAGCACGCC
Dechlorosoma suillum PS, complete genome.
CP003153.1:1676831-1676849
ACCCAGTGCAATATCTGAGAAGCGCAAAGG1676831ACAAACAATGAAACTCCTCGTCATCGGTTCCGGCGGCCGCGAGCACGCC
Crassostrea gigas strain QD chromosome 8.
CP048846.1:51173400-51173418
GATAAAGGAGCAGATATTAATTCATGTAAC51173400ACAAACAATGAAACTCCTCTACACAAAGCCAGTGAATGTGGCCATATGA
Crassostrea gigas strain QD chromosome 8.
CP048846.1:51608850-51608868
GATAAAGGAGCAAATATTGATTCATGTGAA51608850ACAAACAATGAAACTCCTCTACATAAAGCAATTAAAAGGGGATATAAAA
Crassostrea gigas strain QD chromosome 8.
CP048846.1:51615850-51615868
GATAAAGGAGCAAATATTGATTCATGTGAC51615850ACAAACAATGAAACTCCTCTGCATAAAGCAAGTAAACAGGGACACGACC
Crassostrea gigas strain QD chromosome 8.
CP048846.1:51615949-51615967
GAAAAAGGAGCAAATATTGATTCATGTGAC51615949ACAAACAATGAAACTCCTCTACATAAAGCAATTAAAAGGGGACATAAAA
Crassostrea gigas strain QD chromosome 8.
CP048846.1:51625136-51625154
GATAAAGGAGCAAATATTGATTCATGTGAC51625136ACAAACAATGAAACTCCTCTGCATAAAGCAAGTAAACAGGGACACGACC
Asterias rubens genome assembly, chromosome: 13.
LR699104.1:7513826-7513844
GGCTGATGCTCAATGGAACAATGACAGAAA7513826ACAAACAATGAAACTCCTCGCTATTATTTCATTTTGTGGTTGTGAAGAA
Crassostrea gigas genome assembly, linkage group: LG4.
LR761637.1:1364934-1364952
GATAAAGGAGCAGATATTAATTCATGTAAC1364934ACAAACAATGAAACTCCTCTACATAAAGCCATTGAATGTGGACATGAAA
2_Tcm_b3v08.
OE181888.1:26127-26145
CAAATAGTAAGAGTAATGATATCAAAATGA26127ACAAACAATGAAACTCCTCCCAAACTCGGTGTTGTCAAGTGAAGAATGG
Micropterix aruncella genome assembly, chromosome: 5.
OX155954.1:20939931-20939949
ATCTACAAACATAGATAAGAGCGCAAATCA20939931ACAAACAATGAAACTCCTCCGAAATGAGAGATAATTTGCTCTTAGGCGC
Parascotia fuliginaria genome assembly, chromosome: 11.
OY720181.1:15446076-15446094
ACGGTTGGTTGCAAAGATTAGCGCGTTCAA15446076ACAAACAATGAAACTCCTCCGCTATAATAATACTAGCCTGTTTCCTGTC
Magallana gigas genome assembly, chromosome: 8.
OY970752.1:48474005-48474023
GACAAAGAAGTAGACATTTATTCATGTGAC48474005ACAAACAATGAAACTCCTCTACATAAAGCTAGTGAATGGGGACGTGAAA
Magallana gigas genome assembly, chromosome: 8.
OY970752.1:48576906-48576924
GATAAAGGAGCAAATATTGATTCATGTGAC48576906ACAAACAATGAAACTCCTCTGCATAAAGCAAGTAAACAGGGACACGACC
Magallana gigas genome assembly, chromosome: 8.
OY970752.1:48577005-48577023
GAAAAAGGAGCAAATATTGATTCATGTGAC48577005ACAAACAATGAAACTCCTCTACATAAAGCAATTAAAAGGGGACATAAAA
Magallana gigas genome assembly, chromosome: 8.
OY970752.1:48583915-48583933
GATAAAGGAGCAAATATTGATTCATGTGAC48583915ACAAACAATGAAACTCCTCTGCATAAAGCAAGTAAACAGGGACACGACC
Magallana gigas genome assembly, chromosome: 8.
OY970752.1:49718157-49718175
GAAAAGGGAGCAGATATTAATTCATGTGAC49718157ACAAACAATGAAACTCCTCTGCATAAAGCCAGTGAAGGAGGACATGAAA
Magallana gigas genome assembly, chromosome: 8.
OY970752.1:49996836-49996854
GATAAAGGAGCAGATATTAATTCATGTAAC49996836ACAAACAATGAAACTCCTCTACATAAAGCCAGTGAATGTGGACATGAAA
Sepia lycidas genome assembly, chromosome: 3.
OZ010573.1:104376855-104376873
GATGATAACACCAGACCAAATGTAAATAAT104376855ACAAACAATGAAACTCCTCATCTCAGATATTTCCCCCTTAATGAAAGCT
Apteryx australis mantelli genome assembly, scaffold: scaffold228.
LK065635.1:6413998-6414016
GTTTTCTTTCACTGTAAATGGCTATTAATA6413998GAGGAGTTTCATTGTTTGTGAAAAGCTAAATGGTTCAAAATATGATCTT
Melanostigma gelatinosum genome assembly, chromosome: 3.
OX456500.1:17430730-17430748
GTAAATTTGCATGTGTGTGTTCACATTACT17430730GAGGAGTTTCATTGTTTGTTCATTGCTGGTGTTGAATATCACTTTTGAA
Raja brachyura genome assembly, chromosome: 17.
OY740797.1:49520412-49520430
CTTTAAACTAATACGTTTCACTGACGGCTT49520412GAGGAGTTTCATTGTTTGTATAACTCGTTTTCACCAAACCCACAACTAG
GQ0011.BR_I09 GQ001: Male strobili developmental sequence Picea glauca cDNA clone GQ0011_I09 5', mRNA sequence.
CK442036.2:283-301
GGAAAGGCCTCTTCTCTCAGCTGGGCAGTG283GAGGAGTTTCATTGTTTGTTGGAAGCGCGGTTCTGTTCACAGTTGCTTC
GQ0013.BR.1_H14 GQ001: Male strobili developmental sequence Picea glauca cDNA clone GQ0013_H14 5', mRNA sequence.
CK442572.2:500-518
GGAAAGGCCTCTTCTCTCAGCTGGGCAGTG500GAGGAGTTTCATTGTTTGTTGGAAGCGCGGTTCTGTTCACAGTTGCTTC
GQ027116.B3_G07 GQ099: Mixed spruce tissues Picea glauca cDNA clone GenomeQuebec_Id:GQ027116_G07 5', mRNA sequence.
DV994646.1:283-301
GGAAAGGCCTCTTCTCTCAGCTGGGCAGTG283GAGGAGTTTCATTGTTTGTTGGAAGCGCGGTTCTGTTCACAGTTGCTTC
WS0403.C21_G14 SS-S-25 Picea sitchensis cDNA clone WS0403_G14 3', mRNA sequence.
ES262734.1:381-399
GGAAAGACCTCTTCTCTCAGCTGGGCAGTG381GAGGAGTTTCATTGTTTGTTGGAAGCGCGGTTCTGTTCACAGTTGCTTC
WS0403.C21_K10 SS-S-25 Picea sitchensis cDNA clone WS0403_K10 3', mRNA sequence.
ES262811.1:416-434
GGAAAGACCTCTTCTCTCAGCTGGGCAGTG416GAGGAGTTTCATTGTTTGTTGGAAGCGCGGTTCTGTTCACAGTTGCTTC
WS0404.C21_J22 SS-S-25 Picea sitchensis cDNA clone WS0404_J22 3', mRNA sequence.
ES263105.1:409-427
GGAAAGACCTCTTCTCTCAGCTGGGCAGTG409GAGGAGTTTCATTGTTTGTTGGAAGCGCGGTTCTGTTCACAGTTGCTTC
WS0421.C21_H18 SS-NE-27 Picea sitchensis cDNA clone WS0421_H18 3', mRNA sequence.
ES667970.1:352-370
GGAAAGACCTCTTCTCTCAGCTGGGCAGTG352GAGGAGTTTCATTGTTTGTTGGAAGCGCGGTTCTGTTCACAGTTGCTTC
WS0422.C21_L12 SS-NE-27 Picea sitchensis cDNA clone WS0422_L12 3', mRNA sequence.
ES668303.1:472-490
GGAAAGGCCTCTTCTCTCAGCTGTGCAGTG472GAGGAGTTTCATTGTTTGTTGGAAGCGCGGTTCTGTTCACAGTTGCTTC
WS0424.C21_A04 SS-NE-27 Picea sitchensis cDNA clone WS0424_A04 3', mRNA sequence.
ES668656.1:476-494
GGAAAGACCTCTTCTCTCAGCTGGGCAGTG476GAGGAGTTTCATTGTTTGTTGGAAGCGCGGTTCTGTTCACAGTTGCTTC
WS0424.C21_M21 SS-NE-27 Picea sitchensis cDNA clone WS0424_M21 3', mRNA sequence.
ES668899.1:492-510
GGAAAGACCTCTTCTCTCAGCTGGGCAGTG492GAGGAGTTTCATTGTTTGTTGGAAGCGCGGTTCTGTTCACAGTTGCTTC
WS04213.C21_M24 SS-NE-27 Picea sitchensis cDNA clone WS04213_M24 3', mRNA sequence.
ES670214.1:182-200
GGAAAGACCTCTTCTCTCAGCTGGGCAGTG182GAGGAGTTTCATTGTTTGTTGGAAGCGCGGTTCTGTTCACAGTTGCTTC
GQ03506.B7_K24 GQ035 - Needles - End of season Picea glauca cDNA clone GQ03506_K24 5', mRNA sequence.
EX403061.1:469-487
GGAAAGGCCTCTTCTCTCAGCTGGGCAGTG469GAGGAGTTTCATTGTTTGTTGGAAGCGCGGTTCTGTTCACAGTTGCTTC
GQ03507.B7_N21 GQ035 - Needles - End of season Picea glauca cDNA clone GQ03507_N21 5', mRNA sequence.
EX403496.1:508-526
GGAAAGGCCTCTTCTCTCAGCTGGGCAGTG508GAGGAGTTTCATTGTTTGTTGGAAGCGCGGTTCTGTTCACAGTTGCTTC
GQ03511.B7_A10 GQ035 - Needles - End of season Picea glauca cDNA clone GQ03511_A10 5', mRNA sequence.
EX404633.1:508-526
GGAAAGGCCTCTTCTCTCAGCTGGGCAGTG508GAGGAGTTTCATTGTTTGTTGGAAGCGCGGTTCTGTTCACAGTTGCTTC
GQ03512.B7_B07 GQ035 - Needles - End of season Picea glauca cDNA clone GQ03512_B07 5', mRNA sequence.
EX405022.1:253-271
GGAAAGGCCTCTTCTCTCAGCTGGGCAGTG253GAGGAGTTTCATTGTTTGTTGGAAGCGCGGTTCTGTTCACAGTTGCTTC
GQ03514.B7_D20 GQ035 - Needles - End of season Picea glauca cDNA clone GQ03514_D20 5', mRNA sequence.
EX405813.1:385-403
GGAAAGGCCTCTTCTCTCAGCTGGGCAGTG385GAGGAGTTTCATTGTTTGTTGGAAGCGCGGTTCTGTTCACAGTTGCTTC
GQ03515.B7_C12 GQ035 - Needles - End of season Picea glauca cDNA clone GQ03515_C12 5', mRNA sequence.
EX406147.1:506-524
GGAAAGGCCTCTTCTCTCAGCTGGGCAGTG506GAGGAGTTTCATTGTTTGTTGGAAGCGCGGTTCTGTTCACAGTTGCTTC
GQ03603.B7_H06 GQ036 - Shoot tip - Active growth Picea glauca cDNA clone GQ03603_H06 5', mRNA sequence.
EX408839.1:501-519
GGAAAGGCCTCTTCTCTCAGCTGGGCAGTG501GAGGAGTTTCATTGTTTGTTGGAAGCGCGGTTCTGTTCACAGTTGCTTC
Picea glauca clone GQ03511_A10 mRNA sequence.
BT114234.1:505-523
GGAAAGGCCTCTTCTCTCAGCTGGGCAGTG505GAGGAGTTTCATTGTTTGTTGGAAGCGCGGTTCTGTTCACAGTTGCTTC
Sambucus nigra genome assembly, chromosome: 3.
OX422209.1:498062727-498062745
GTGGTTGATTAGAAGAGGATTGAGATGGAA498062727GAGGAGTTTCATTGTTTGTTGGATCATCACTGTTCCTATTCGACATTTT
Crassostrea gigas strain QD chromosome 8.
CP048846.1:52971795-52971813
TTTCGCGTCCCCATTCACTGGCTTTATATA52971795GAGGAGTTTCATTGTTTGTGTCATATGAATTAATATCTGCTCCTTTATC
Hesperia comma genome assembly, chromosome: 8.
FR990021.1:5943927-5943945
AACCAATAATCTTACCAATAATATAAAGCA5943927GAGGAGTTTCATTGTTTGTTTTTTGTTTGAACGTATGTAGATACTAATC
Hydriomena furcata genome assembly, chromosome: 12.
OU538831.1:5667591-5667609
CAAAGTTTTTAATCAATCGAAGTATTTACT5667591GAGGAGTTTCATTGTTTGTGTTTGTTGAACAGCTCATAACTCCATTATC
Agonopterix subpropinquella genome assembly, chromosome: 10.
OV277703.1:23935890-23935908
TTAATTGCCGATGATTTGATGTCATCAGTT23935890GAGGAGTTTCATTGTTTGTGCTATATCGTATCTTTATCAAATTAGTTTT
Tholera decimalis genome assembly, chromosome: 25.
OW964573.2:115283-115301
TTTCTGTGATCATAACAAATGAAGTCCCCA115283GAGGAGTTTCATTGTTTGTGCTTTATTTTATATTAAAGATCAAAAGATA
Herminia tarsipennalis genome assembly, chromosome: 6.
OX243836.2:9090423-9090441
TCTAACCAATTTTAATCACAGTAGATTCTC9090423GAGGAGTTTCATTGTTTGTCTCCAAAACTCATCATCAAAACTTTACACC
Isoperla grammatica genome assembly, chromosome: 6.
OX246742.1:47464795-47464813
GGTTTGGAATCTTCTTCATTTATGATCTGC47464795GAGGAGTTTCATTGTTTGTTATGTTTGGTGTACATATTATAAATTAAGC
Polymixis lichenea genome assembly, chromosome: 10.
OX420941.1:14149383-14149401
GCAATCGCGGTTTGTTTGCTGTAATTTTTT14149383GAGGAGTTTCATTGTTTGTCTCCGAAACGCATCATCAGAACTATATGAA
Tipula vernalis genome assembly, chromosome: 3.
OY282560.1:267473448-267473466
TATTTTCCGATAAGTTTCTTGTTCATGTGA267473448GAGGAGTTTCATTGTTTGTATGACATTAAATTAAACATAAGTTTAACAT
Azorinus chamasolen genome assembly, chromosome: 15.
OY755249.1:9293862-9293880
ACACTGATGTTAATTTGAACGTCCAGTTTA9293862GAGGAGTTTCATTGTTTGTGTAGCTTTTAAACCCTCTGGTTGGGAATCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ACAAACAATGAAACTCCTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ACAAACAATGAAACTCCTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.595 | 0.586 | search_plus_done; http://172.18.8.135:50400/match?q=ACAAACAATGAAACTCCTC&k=0&no_gap=0&offset=0&limit=50
1.645 | 1.050 | search_minus_done; http://172.18.8.135:50400/match?q=GAGGAGTTTCATTGTTTGT&k=0&no_gap=0&offset=0&limit=18
1.666 | 0.022 | cgi_end;

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