GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:36:50, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

KR 1020110025451-A/5: A Method for Identifying Barley Varieties using Molecular Markers.
DI185922.1:1-18
1ACAAAGCTCGTGGTACGT
Desulfatiglandales bacterium isolate 53c9cee3-5eb1-4031-9065-1ba860722897 genome assembly, chromosome: 3.
OY760212.1:227191-227208
GATGCCAAGGCTTTTGGCAACCCTCGCCGA227191ACAAAGCTCGTGGTACGTGAGGAGGCAAAGGTTATTGCTGCCATTGAC
Secale cereale genome assembly, chromosome: 2R.
LR738710.1:290494969-290494986
GGAGAAACACCATATGATTCAACTATAGTA290494969ACAAAGCTCGTGGTACGTCAAGATCATGCAAAATCAAGAACACGAGAT
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 5H.
LR824636.1:205137832-205137849
GGAAGAACACCATCTGATCCAGCTAAGTTA205137832ACAAAGCTCGTGGTACGTCAAGATCTTGCCAGATCATGAAAACAAGAG
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 5H.
LR828119.1:201788977-201788994
GGAAGAACACCATCTGATCCAGCTAAGTTA201788977ACAAAGCTCGTGGTACGTCAAGATCTTGCCAGATCATGAAAACAAGAG
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 5H.
LR828150.2:199467142-199467159
GGAAGAACACCATCTGATCCAGCTAAGTTA199467142ACAAAGCTCGTGGTACGTCAAGATCTTGCCAGATCATGAAAACAAGAG
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 5H.
LR828270.1:198205572-198205589
GGAAGAACACCATCTGATCCAGCTAAGTTA198205572ACAAAGCTCGTGGTACGTCAAGATCTTGCCAGATCATGAAAACAAGAG
Triticum aestivum genome assembly, chromosome: 6A.
LR865494.1:260887055-260887072
GGAGAAACACCATATGATCCAACTATATTA260887055ACAAAGCTCGTGGTACGTCAAGATCATTCCAAGTCAAGAACATGAGAG
Aegilops sharonensis genome assembly, chromosome: 2S.
LR880967.1:87802365-87802382
GGAGAAACACCATATGATCCAACTATAGTA87802365ACAAAGCTCGTGGTACGTCACGATGATGGGCCTCCAAGCGTAGAGTTT
Aegilops sharonensis genome assembly, chromosome: 2S.
LR880967.1:322604003-322604020
GGAGAAACACCATATGATCCAACTATAGTA322604003ACAAAGCTCGTGGTACGTCAACATCGTACCAAATCAAGAACATGAGAG
Aegilops longissima genome assembly, chromosome: 2S.
LR881070.1:67467200-67467217
GGAGAAACACCATATGATCCAACTATAGTA67467200ACAAAGCTCGTGGTACGTCACGATGATGGGCCTCCAAGCGTAGAGTTT
Aegilops longissima genome assembly, chromosome: 2S.
LR881070.1:295419459-295419476
GGAGAAACACCATATGATCCAACTATAGTA295419459ACAAAGCTCGTGGTACGTCAACATCGTACCAAATCAAGAACATGAGAG
Triticum aestivum genome assembly, chromosome: 2A.
LS992083.1:769878375-769878392
AGAGAAACATCATAAGATCCAACTACAATA769878375ACAAAGCTCGTGGTACGTCAAGATCGTGCCAAATCAAGAACACGAGAG
Triticum turgidum subsp. durum genome assembly, chromosome: 6A.
LT934121.1:288516030-288516047
GGAGAAACACCATATGATCCAACTATATTA288516030ACAAAGCTCGTGGTACGTCAAGATCATTCCAAGTCAAGAACATGAGAG
Aegilops speltoides subsp. speltoides genome assembly, chromosome: 5B.
OX082601.1:268438068-268438085
GGAAAAACACCATATGATCCAACTATATTA268438068ACAAAGCTCGTGGTACGTCAAGATTGTTCCAAATTAAGAACACGAGAG
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 5H.
OX459906.1:206048826-206048843
GGAAGAACACCATCTGATCCAGCTAAGTTA206048826ACAAAGCTCGTGGTACGTCAAGATCTTGCCAGATCATGAAAACAAGAG
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 5H.
OX459981.1:203855330-203855347
GGAAGAACACCATCTGATCCAGCTAAGTTA203855330ACAAAGCTCGTGGTACGTCAAGATCTTGCCAGATCATGAAAACAAGAG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 3H.
OX460049.1:587397581-587397598
GTAGGAACACCATATGATCCAACTATATTA587397581ACAAAGCTCGTGGTACGTCAAGATCGTGCCAAATCAACAACACGAGAG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 5H.
OX460093.1:199263521-199263538
GGAAGAACACCATCTGATCCAGCTAAGTTA199263521ACAAAGCTCGTGGTACGTCAAGATCTTGCCAGATCATGAAAACAAGAG
Hordeum vulgare genome assembly, chromosome: 5H.
OX460099.1:201317518-201317535
GGAAGAACACCATCTGATCCAGCTAAGTTA201317518ACAAAGCTCGTGGTACGTCAAGATCTTGCCAGATCATGAAAACAAGAG
Hordeum vulgare genome assembly, chromosome: 5H.
OX460233.1:197181076-197181093
GGAAGAACACCATCTGATCCAGCTAAGTTA197181076ACAAAGCTCGTGGTACGTCAAGATCTTGCCAGATCATGAAAACAAGAG
Hordeum vulgare genome assembly, chromosome: 2H.
OX460237.1:48580744-48580761
GGAAGAAGGCCATATTGTCCAACTATATTA48580744ACAAAGCTCGTGGTACGTCAAGATAATGCCAAATCAAGAACGCGCGCG
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 5H.
OX638795.1:201906620-201906637
GGAAGAACACCATCTGATCCAGCTAAGTTA201906620ACAAAGCTCGTGGTACGTCAAGATCTTGCCAGATCATGAAAACAAGAG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 5H.
OX638872.1:199906065-199906082
GGAAGAACACCATCTGATCCAGCTAAGTTA199906065ACAAAGCTCGTGGTACGTCAAGATCTTGCCAGATCATGAAAACAAGAG
Hordeum bulbosum genome assembly, chromosome: 7H_1.
OY737466.1:273249989-273250006
AGAAGAACACCATATAATCCAACCACAGTA273249989ACAAAGCTCGTGGTACGTCAATATCATGCCACATCGAGAACATGAGAG
Hordeum bulbosum genome assembly, chromosome: 7H_3.
OY737480.1:277178123-277178140
AGAAGAACACCATATAATCCAACCACAGTA277178123ACAAAGCTCGTGGTACGTCAATATCATGCCACATCGAGAACATGAGAG
Hordeum bulbosum genome assembly, chromosome: 7H_4.
OY737487.1:269775024-269775041
AGAAGAACACCATATAATCCAACCACAGTA269775024ACAAAGCTCGTGGTACGTCAATATCATGCCACATCGAGAACATGAGAG
Hordeum bulbosum genome assembly, chromosome: 7H_2.
OY737653.1:295731991-295732008
AGAAGAACACCATATAATCCAACCACAGTA295731991ACAAAGCTCGTGGTACGTCAATATCATGCCACATCGAGAACATGAGAG
Triticum monococcum genome assembly, chromosome: 6A.
OY737855.1:307802202-307802219
GGAGAAACACCATATGATCCAACTATATTA307802202ACAAAGCTCGTGGTACGTCAAGATCATTCCAAGTCAAGAACACGAGAG
Hordeum bulbosum genome assembly, chromosome: 7H_2.
OY737879.1:298696576-298696593
AGAAGAACACCATATAATCCAACCACAGTA298696576ACAAAGCTCGTGGTACGTCAATATCATGCCACATCGAGAACATGAGAG
Hordeum bulbosum genome assembly, chromosome: 7H_4.
OY737893.1:301037147-301037164
AGAAGAACACCATATAATCCAACCACAGTA301037147ACAAAGCTCGTGGTACGTCAATATCATGCCACATCGAGAACATGAGAG
Ulota crispa genome assembly, chromosome: 7.
OY987248.1:8944467-8944484
GCTCCAACAATTTGTAATTTATATGAGATT8944467ACAAAGCTCGTGGTACGTAGCTGCACTTTCCAAGTTGGTATGAGGCCA
Triticum timopheevii genome assembly, chromosome: 6At.
OY997271.1:246326016-246326033
GGAGAAACACCATATGATCCAACAATATTA246326016ACAAAGCTCGTGGTACGTCAAGATCATTCCAAGTCAAGAACATGAGAG
Euplagia quadripunctaria genome assembly, chromosome: 15.
OY982574.1:8871028-8871045
AAGTTTAAAAGTTATCATAATGGAGGAAAT8871028ACAAAGCTCGTGGTACGTATTCTCCTATCATCATTACGTTAACTTTTA
Aegilops umbellulata cultivar TA1851 chromosome 2U.
CP136055.1:300070860-300070877
CTCTCGTGTTCCTGATTTGGCACGATCTTG300070860ACGTACCACGAGCTTTGTTACTATAGTTGAATCATATGGTGTTTCTCC
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 2H.
HG994375.1:561591084-561591101
CGCGCGCGTTCTTGATTTGGCATTATCTTG561591084ACGTACCACGAGCTTTGTTAATATAGTTGGACAATATGGCCTTCTTCC
Secale cereale genome assembly, chromosome: 2R.
LR738710.1:572733385-572733402
CTCTCGTGTTCTTGATTTGGCACGATCTTG572733385ACGTACCACGAGCTTTGTTAATATAGTTAGATCATATGGTGTTTATCC
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 2H.
LR828095.1:593917116-593917133
CGCGCGCGTTCTTGATTTGGCATTATCTTG593917116ACGTACCACGAGCTTTGTTAATATAGTTGGACAATATGGCCTTCTTCC
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 2H.
LR828140.1:650045753-650045770
CGCGCGCGTTCTTGATTTGGCATTATCTTG650045753ACGTACCACGAGCTTTGTTAATATAGTTGGACAATATGGCCTTCTTCC
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 2H.
LR828154.1:583899118-583899135
CGCGCGCGTTCTTGATTTGGCATTATCTTG583899118ACGTACCACGAGCTTTGTTAATATAGTTGGACAATATGGCCTTCTTCC
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 2H.
LR828161.1:622187430-622187447
CGCGCGCGTTCTTGATTTGGCATTATCTTG622187430ACGTACCACGAGCTTTGTTAATATAGTTGGACAATATGGCCTTCTTCC
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 2H.
LR828175.1:609475797-609475814
CGCGCGCGTTCTTGATTTGGCATTATCTTG609475797ACGTACCACGAGCTTTGTTAATATAGTTGGACAATATGGCCTTCTTCC
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 2H.
LR828274.1:631115536-631115553
CGCGCGCGTTCTTGATTTGGCATTATCTTG631115536ACGTACCACGAGCTTTGTTAATATAGTTGGACAATATGGCCTTCTTCC
Triticum aestivum genome assembly, chromosome: 2A.
LR877312.1:781831930-781831947
CTCTCGTGTTCTTGATTTGGCACGATCTTG781831930ACGTACCACGAGCTTTGTTATTGTAGTTGGATCTTATGATGTTTCTCT
Triticum aestivum genome assembly, chromosome: 2A.
LR878438.1:769481161-769481178
CTCTCGTGTTCTTGATTTGGCACGATCTTG769481161ACGTACCACGAGCTTTGTTATTGTAGTTGGATCTTATGATGTTTCTCT
Aegilops longissima genome assembly, chromosome: 5S.
LR881073.1:204860531-204860548
CTCTCGTGTTCCTGATTTGGCACGATCTTG204860531ACGTACCACGAGCTTTGTTAATATAGTTGGATCATATGGTGTTTTCCC
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 2H.
OU015682.1:616884274-616884291
CGCGCGCGTTCTTGATTTGGCATTATCTTG616884274ACGTACCACGAGCTTTGTTAATATAGTTGGACAATATGGCCTTCTTCC
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 2H.
OU015702.1:622398711-622398728
CGCGCGCGTTCTTGATTTGGCATTATCTTG622398711ACGTACCACGAGCTTTGTTAATATAGTTGGACAATATGGCCTTCTTCC
Hordeum vulgare genome assembly, chromosome: 2H.
OU701464.1:557173018-557173035
CGCGCGCGTTCTTGATTTGGCATTATCTTG557173018ACGTACCACGAGCTTTGTTAATATAGTTGGACAATATGGCCTTCTTCC
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 2H.
OX459992.1:594816130-594816147
CGCGCGCGTTCTTGATTTGGCATTATCTTG594816130ACGTACCACGAGCTTTGTTAATATAGTTGGACAATATGGCCTTCTTCC
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 2H.
OX459999.1:596478805-596478822
CGCGCGCGTTCTTGATTTGGCATTATCTTG596478805ACGTACCACGAGCTTTGTTAATATAGTTGGACAATATGGCCTTCTTCC
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 2H.
OX460034.1:597000839-597000856
CGCGCGCGTTCTTGATTTGGCATTATCTTG597000839ACGTACCACGAGCTTTGTTAATATAGTTGGACAATATGGCCTTCTTCC
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 2H.
OX460041.1:600576202-600576219
CGCGCGCGTTCTTGATTTGGCATTATCTTG600576202ACGTACCACGAGCTTTGTTAATATAGTTGGACAATATGGCCTTCTTCC
Hordeum vulgare genome assembly, chromosome: 2H.
OX460061.1:599463910-599463927
CGCGCGCGTTCTTGATTTGGCATTATCTTG599463910ACGTACCACGAGCTTTGTTAATATAGTTGGACAATATGGCCTTCTTCC
Hordeum vulgare genome assembly, chromosome: 2H.
OX460125.1:598474408-598474425
CGCGCGCGTTCTTGATTTGGCATTATCTTG598474408ACGTACCACGAGCTTTGTTAATATAGTTGGACAATATGGCCTTCTTCC
Hordeum vulgare genome assembly, chromosome: 2H.
OX460195.1:597758850-597758867
CGCGCGCGTTCTTGATTTGGCATTATCTTG597758850ACGTACCACGAGCTTTGTTAATATAGTTGGACAATATGGCCTTCTTCC
Hordeum vulgare genome assembly, chromosome: 2H.
OX460216.1:601532028-601532045
CGCGCGCGTTCTTGATTTGGCATTATCTTG601532028ACGTACCACGAGCTTTGTTAATATAGTTGGACAATATGGCCTTCTTCC
Hordeum vulgare genome assembly, chromosome: 2H.
OX460230.1:600132140-600132157
CGCGCGCGTTCTTGATTTGGCATTATCTTG600132140ACGTACCACGAGCTTTGTTAATATAGTTGGACAATATGGCCTTCTTCC
Hordeum vulgare genome assembly, chromosome: 2H.
OX460244.1:597800065-597800082
CGCGCGCGTTCTTGATTTGGCATTATCTTG597800065ACGTACCACGAGCTTTGTTAATATAGTTGGACAATATGGCCTTCTTCC
Hordeum vulgare genome assembly, chromosome: 2H.
OX460265.1:595546855-595546872
CGCGCGCGTTCTTGATTTGGCATTATCTTG595546855ACGTACCACGAGCTTTGTTAATATAGTTGGACAATATGGCCTTCTTCC
Hordeum vulgare genome assembly, chromosome: 2H.
OX460307.1:600978154-600978171
CGCGCGCGTTCTTGATTTGGCATTATCTTG600978154ACGTACCACGAGCTTTGTTAATATAGTTGGACAATATGGCCTTCTTCC
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 7H.
OX590754.1:532768753-532768770
CTCTCATGTTCTTGAGATGGAATGATCTTG532768753ACGTACCACGAGCTTTGTTAATATAGTTGGATCATACAGTGTTCTTCC
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 2H.
OX638743.1:598359612-598359629
CGCGCGCGTTCTTGATTTGGCATTATCTTG598359612ACGTACCACGAGCTTTGTTAATATAGTTGGACAATATGGCCTTCTTCC
Hordeum vulgare genome assembly, chromosome: 2H.
OX638785.1:597830847-597830864
CGCGCGCGTTCTTGATTTGGCATTATCTTG597830847ACGTACCACGAGCTTTGTTAATATAGTTGGACAATATGGCCTTCTTCC
Hordeum vulgare genome assembly, chromosome: 2H.
OX638806.1:596297612-596297629
CGCGCGCGTTCTTGATTTGGCATTATCTTG596297612ACGTACCACGAGCTTTGTTAATATAGTTGGACAATATGGCCTTCTTCC
Hordeum vulgare genome assembly, chromosome: 2H.
OX638820.1:601151421-601151438
CGCGCGCGTTCTTGATTTGGCATTATCTTG601151421ACGTACCACGAGCTTTGTTAGTATAGTTGGACAATATGGCCTTCTTCC
Hordeum bulbosum genome assembly, chromosome: 1H_1.
OY737392.1:230927923-230927940
CTCTTGTGTTCTTGATTTGGCACGATCTTG230927923ACGTACCACGAGCTTTGTTAATATAGTTGATCATATGGTGTTCGTTGA
Hordeum bulbosum genome assembly, chromosome: 7H_2.
OY737502.1:60460146-60460163
CTCCCTCCCTCCCTCTCTCTCGTGATCTTG60460146ACGTACCACGAGCTTTGTAAATATAGTAGAATCATATGTTGTTCTTCC
Triticum monococcum genome assembly, chromosome: 5A.
OY737854.1:178609110-178609127
CTCTCGTGTTCTTGATATGGCACGATCTTG178609110ACGTACCACGAGCTTTGTTACTATAGTTAGATCATATGGTGGTTCTCC
Triticum monococcum genome assembly, chromosome: 6A.
OY737863.1:309724006-309724023
CTCTCGTGTTCTTGACTTGGAATGATCTTG309724006ACGTACCACGAGCTTTGTTAATATAGTTGGATCATATGGTGTTTCTCC
Triticum timopheevii genome assembly, chromosome: 2At.
OY997263.1:756551810-756551827
CTCTCGTGTTCTTGATTTGGCACGATCTTG756551810ACGTACCACGAGCTTTGTTATTGTAGTTGGATCTTATGATGTTTCTCT
Triticum timopheevii genome assembly, chromosome: 6At.
OY997271.1:129795146-129795163
CTCTCGTGTTCTTGATTTGGCACGATTTTG129795146ACGTACCACGAGCTTTGTTATTATAGTTGGATCTTATGATGTTTCTCC
Notocelia uddmanniana genome assembly, chromosome: 2.
LR991054.1:8279901-8279918
ACATACTTTTTATTTGGACATTTAAACAGT8279901ACGTACCACGAGCTTTGTGGAAGGAAAATATGGTGAGATACGGGCATA
Apotomis betuletana genome assembly, chromosome: 18.
OW026316.1:9747649-9747666
AAACTAATTATTTTATAAATGTAATTCAAA9747649ACGTACCACGAGCTTTGTTAACGTCAATTTGTATTCGCCGGTGGAACT
Dinocampus coccinellae genome assembly, chromosome: 2.
OY987185.1:2749264-2749281
GACGTTAATCGATGTCGAGTTATATATGAC2749264ACGTACCACGAGCTTTGTAGTCTATACATTTATCTATGTGTATATTAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ACAAAGCTCGTGGTACGT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ACAAAGCTCGTGGTACGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.200 | 0.191 | search_plus_done; http://172.18.8.135:50400/match?q=ACAAAGCTCGTGGTACGT&k=0&no_gap=0&offset=0&limit=50
0.329 | 0.129 | search_minus_done; http://172.18.8.135:50400/match?q=ACGTACCACGAGCTTTGT&k=0&no_gap=0&offset=0&limit=16
0.355 | 0.026 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).