GGGenome | Results

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

65JKBNM0_T3_006_H09_16MAR2005_065 65JKBNM0 Brassica napus cDNA 5', mRNA sequence.
EL587221.1:178-197

CAAGAGATATAGATAGATTACATGGTTGGC178ACAAGGGCTTAAGAGAGCTCTTTATGTCTTTTTTGTAATGCACAGATCAG

0079874 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV156012.1:211-230

CAAGAGATATAGATAGATTACATGGTTGGC211ACAAGGGCTTAAGAGAGCTCTTTATGTCTTTTTTGTAATGCACAGATCAG

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_8722.
FX691815.1:50-69

CAAGAGATATAGATAGATTACATGGTTGGC50ACAAGGGCTTAAGAGAGCTCTTTATGTCTTTTTTGTAATGCACAGATCAG

TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_15133.
FX726419.1:41-60

CAAGAGATATAGATAGATTACATGGTTGGC41ACAAGGGCTTAAGAGAGCTCTTTATGTCTTTTTTGTAATGCACAGATCAG

Brassica napus GSS, clone JBnB005A14, end read, primer SACL2(forward).
CU984619.1:363-382

CAAGAGATATAGATAGATTACATGGTTGGC363ACAAGGGCTTAAGAGAGCTCTTTATGTCTTTTTTGTAATGCACAGATCAG

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB008I08, complete sequence.
AC189212.2:107248-107267

CAAGAGATATAGATAGATTACATGGTTGGC107248ACAAGGGCTTAAGAGAGCTCTTTATGTCTTTTTTGTAATGCACAGATCAG

Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:2576832-2576851

CTGATCTGTGCATTACAAAAAAGACATAAA2576832GAGCTCTCTTAAGCCCTTGTGCCAACCATGTAATCTATCTATATCTCTTG

Brassica napus genome assembly, chromosome: A03.
HG994357.1:2537024-2537043

CTGATCTGTGCATTACAAAAAAGACATAAA2537024GAGCTCTCTTAAGCCCTTGTGCCAACCATGTAATCTATCTATATCTCTTG

Brassica rapa genome, scaffold: A03.
LR031572.1:2498565-2498584

CTGATCTGTGCATTACAAAAAAGACATAAA2498565GAGCTCTCTTAAGCCCTTGTGCCAACCATGTAATCTATCTATATCTCTTG

Brassica rapa genome assembly, chromosome: A03.
LS974619.2:2499362-2499381

CTGATCTGTGCATTACAAAAAAGACATAAA2499362GAGCTCTCTTAAGCCCTTGTGCCAACCATGTAATCTATCTATATCTCTTG

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Debug Info:

0.009 | 0.009 | search_start;
0.318 | 0.309 | search_plus_done; http://172.18.8.135:50400/match?q=ACAAGGGCTTAAGAGAGCTC&k=0&no_gap=0&offset=0&limit=50
0.477 | 0.159 | search_minus_done; http://172.18.8.135:50400/match?q=GAGCTCTCTTAAGCCCTTGT&k=0&no_gap=0&offset=0&limit=44
0.480 | 0.003 | cgi_end;

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