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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 05:42:59, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KBrB034I14F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB034I14, genomic survey sequence.
DX036178.1:86-105
ACGATTCGTGGAGACACATCTTATAAAAGT86ACAATGAGCTGTGTTGACGCAGGAAACATTGATGTGAACCATGTGCTTTG
KBrB044G13R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB044G13, genomic survey sequence.
DX043655.1:86-105
AAGATTCGTGGAGACACATCTTATAAAAGT86ACAATGAGCTGTGTTGACGCAGGAAACATTGATGTGAACCATGTGCTTTG
KBrB046C16F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB046C16, genomic survey sequence.
DX044999.1:86-105
AAGATTCGTGGAGACACATCTTATAAAAGT86ACAATGAGCTGTGTTGACGCAGGAAACATTGATGTGAACCATGTGCTTTG
KBrB059J24R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB059J24, genomic survey sequence.
DX055160.1:86-105
AAGATTCGTGGAGACACATCTTATAAAAGT86ACAATGAGCTGTGTTGACGCAGGAAACATTGATGTGAACCATGTGCTTTG
KBrB102M01F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB102M01, genomic survey sequence.
ED517327.1:103-122
AAGATTCGTGGAGACACATCTTATAAAAGT103ACAATGAGCTGTGTTGACGCAGGAAACATTGATGTGAACCATGTGCTTTG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' linkage group A02, pooled multiple clones, *** SEQUENCING IN PROGRESS ***, 98 unordered pieces.
AC234734.2:997-1016
AAGATTCGTGGAGACACATCTTATAAAAGT997ACAATGAGCTGTGTTGACGCAGGAAACATTGATGTGAACCATGTGCTTTG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034I14, complete sequence.
AC189311.2:85-104
AAGATTCGTGGAGACACATCTTATAAAAGT85ACAATGAGCTGTGTTGACGCAGGAAACATTGATGTGAACCATGTGCTTTG
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:3857736-3857755
AAGATTCGTGGAGACACATCTTATAAAAGT3857736ACAATGAGCTGTGTTGACGCAGGAAACATTGATTAGCCATGTGCTTTGAA
Pseudochaenichthys georgianus genome assembly, chromosome: 22.
LR792567.1:8285123-8285142
CACTTGCATATGACAAAACCAATTTGTCAT8285123GCGTCAACACAGCTCATTGTCTTTTCCTTAATAACCACACAGCTGTTAAT
KBrH094N11F Brassica rapa BAC library KBrH Brassica rapa genomic clone KBrH094N11, genomic survey sequence.
DU116464.1:226-245
CAAAGCACATGGTTCACATCAATGTTTCCT226GCGTCAACACAGCTCATTGTACTTTTATAAGATGTGTCTCCACGAATCTT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' linkage group A02, pooled multiple clones, *** SEQUENCING IN PROGRESS ***, 126 unordered pieces.
AC234733.2:64272-64291
CAAAGCACATGGTTCACATCAATGTTTCCT64272GCGTCAACACAGCTCATTGTACTTTTATAAGATGTGTCTCCACGAATCTT
Brassica napus genome assembly, chromosome: A07.
HG994361.1:25526069-25526088
TTCAAAGCACATGGCTAATCAATGTTTCCT25526069GCGTCAACACAGCTCATTGTACTTTTATAAGATGTGTCTCCACGAATCTT
Brassica rapa genome, scaffold: A07.
LR031574.1:24432639-24432658
CAAAGCACATGGTTCACATCAATGTTTCCT24432639GCGTCAACACAGCTCATTGTACTTTTATAAGATGTGTCTCCACGAATCTT
Brassica oleracea HDEM genome, scaffold: C6.
LR031880.1:41227899-41227918
CAAAGCACATGGTTCACATCAATGTTTCCT41227899GCGTCAACACAGCTCATTGTACTTTTATAAGATGTGTCTTCACGAATCTT
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:24770879-24770898
CAAAGCACATGGTTCACATCAATGTTTCCT24770879GCGTCAACACAGCTCATTGTACTTTTATAAGATGTGTCTCCACGAATCTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ACAATGAGCTGTGTTGACGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ACAATGAGCTGTGTTGACGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.251 | 0.243 | search_plus_done; http://172.18.8.135:50400/match?q=ACAATGAGCTGTGTTGACGC&k=0&no_gap=0&offset=0&limit=50
0.332 | 0.081 | search_minus_done; http://172.18.8.135:50400/match?q=GCGTCAACACAGCTCATTGT&k=0&no_gap=0&offset=0&limit=42
0.337 | 0.005 | cgi_end;

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