GGGenome | Results

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Trifolium pratense cDNA clone:RCC05991.
BB933498.1:72-91

GATGCAACCTGGAGGACCTGGCATGGCTCC72ACACACAATCCCCCAACAATACCAACAACAACAACAACAACAACCCTACA

Trifolium pratense cDNA clone:RCC09516.
BB936561.1:98-117

GATGCAACCTGGAGGACCTGGCATGGCTCC98ACACACAATCCCCCAACAATACCAACAACAACAACAACAACAACAACCCT

Trifolium pratense cDNA clone:RCC12319.
BB938973.1:68-87

GATGCGACCTGGAGGACCTGGCATGGCTCC68ACACACAATCCCCCAACAATACCAACAACAACAACAACAACAACCCTACA

Trifolium pratense mRNA for putative DNA binding protein, complete cds.
AB234881.1:92-111

GATGCAACCTGGAGGACCTGGCATGGCTCC92ACACACAATCCCCCAACAATACCAACAACAACAACAACAACAACCCTACA

Oxystoma pomonae genome assembly, chromosome: 3.
OY998165.1:125795142-125795161

AGTTTTCTGATCTTTTTGCTCTTCTTTTAC125795142ACACACAATCCCCCAACAATGCTGCCGTATTCACTATATTATGATTATCG

Mus musculus BAC clone RP24-206N14 from 9, complete sequence.
AC125100.4:50373-50392

TAGCCTTTTATCTAATTATTTCATTTGAAA50373ATTGTTGGGGGATTGTGTGTGTGTGCTTGGAGAATGAGTCTCCTGTTGCC

Mus musculus genome assembly, chromosome: 9.
OW971566.1:113419749-113419768

TAGCCTTTTATCTAATTATTTCATTTGAAA113419749ATTGTTGGGGGATTGTGTGTGTGTGCTTGGAGAATGAGTCTCCTGTTGCC

Mus musculus genome assembly, chromosome: 9.
OW971583.1:113264409-113264428

TAGCCTTTTATCTAATTATTTCATTTGAAA113264409ATTGTTGGGGGATTGTGTGTGTGTGCTTGGAGAATGAGTCTCCTGTTGCC

Mus musculus genome assembly, chromosome: 9.
OW971604.1:113227503-113227522

TAGCCTTTTATCTAATTATTTCATTTGAAA113227503ATTGTTGGGGGATTGTGTGTGTGTGCTTGGAGAATGAGTCTCCTGTTGCC

Mus musculus domesticus genome assembly, chromosome: 9.
OW971630.1:112656468-112656487

TAGCCTTTTATCTAATTATTTCATTTGAAA112656468ATTGTTGGGGGATTGTGTGTGTGTGCTTGGAGAATGAGTCTCCTGTTGCC

Mus musculus genome assembly, chromosome: 9.
OW971646.1:113304299-113304318

TAGCCTTTTATCTAATTATTTCATTTGAAA113304299ATTGTTGGGGGATTGTGTGTGTGTGCTTGGAGAATGAGTCTCCTGTTGCC

Mus musculus molossinus genome assembly, chromosome: 9.
OW971668.1:113428467-113428486

TAGCCTTTTATCTAGTTATTTCATTTGAAA113428467ATTGTTGGGGGATTGTGTGTGTGTGCCTGTTGCCCAGAGTTGCCTCAAAC

Mus spretus genome assembly, chromosome: 9.
OW971688.1:115042448-115042467

TAGCCTTTTATCTAGTTATTTCATTTGAAA115042448ATTGTTGGGGGATTGTGTGTGTGTGCTTGGACACAGAGTCTCCTGTTGCC

Mus musculus genome assembly, chromosome: 9.
OW971717.1:113430211-113430230

TAGCCTTTTATCTAATTATTTCATTTGAAA113430211ATTGTTGGGGGATTGTGTGTGTGTGCTTGGAGAATGAGTCTCCTGTTGCC

Mus musculus genome assembly, chromosome: 9.
OW971730.1:113577479-113577498

TAGCCTTTTATCTAATTATTTCATTTGAAA113577479ATTGTTGGGGGATTGTGTGTGTGTGCTTGGAGAATGAGTCTCCTGTTGCC

Mus musculus genome assembly, chromosome: 9.
OW971751.1:112766776-112766795

TAGCCTTTTATCTAATTATTTCATTTGAAA112766776ATTGTTGGGGGATTGTGTGTGTGTGCTTGGAGAATGAGTCTCCTGTTGCC

Mus musculus musculus genome assembly, chromosome: 9.
OW971772.1:113376521-113376540

TAGCCTTTTATCTAGTTATTTCATTTGAAA113376521ATTGTTGGGGGATTGTGTGTGTGTGCCTGTTGCCCAGAGTTGCCTCAAAC

Mus musculus genome assembly, chromosome: 9.
OW971793.1:113176667-113176686

TAGCCTTTTATCTAATTATTTCATTTGAAA113176667ATTGTTGGGGGATTGTGTGTGTGTGCTTGGAGAATGAGTCTCCTGTTGCC

Mus musculus genome assembly, chromosome: 9.
OW971814.1:113598505-113598524

TAGCCTTTTATCTAATTATTTCATTTGAAA113598505ATTGTTGGGGGATTGTGTGTGTGTGCTTGGAGAATGAGTCTCCTGTTGCC

Mus musculus castaneus genome assembly, chromosome: 9.
OW971843.1:113204096-113204115

TAGCCTTTTATCTAATTATTTCATTTGAAA113204096ATTGTTGGGGGATTGTGTGTGTGTGCTTGGAGAATGAGTCTCCTGTTGCC

Mus musculus genome assembly, chromosome: 9.
OW971860.1:113526069-113526088

TAGCCTTTTATCTAATTATTTCATTTGAAA113526069ATTGTTGGGGGATTGTGTGTGTGTGCTTGGAGAATGAGTCTCCTGTTGCC

Mus musculus genome assembly, chromosome: 9.
OX389803.1:113981870-113981889

TAGCCTTTTATCTAATTATTTCATTTGAAA113981870ATTGTTGGGGGATTGTGTGTGTGTGCTTGGAGAATGAGTCTCCTGTTGCC

Mus musculus genome assembly, chromosome: 9.
OX390155.1:113706066-113706085

TAGCCTTTTATCTAATTATTTCATTTGAAA113706066ATTGTTGGGGGATTGTGTGTGTGTGCTTGGAGAATGAGTCTCCTGTTGCC

Mus musculus genome assembly, chromosome: 9.
OX439025.1:120960327-120960346

TAGCCTTTTATCTAATTATTTCATTTGAAA120960327ATTGTTGGGGGATTGTGTGTGTGTGCTTGGAGAATGAGTCTCCTGTTGCC

Trifolium pratense cDNA clone:RCC00310.
BB928978.1:531-550

TGTAGGGTTGTTGTTGTTGTTGGTGTTGGT531ATTGTTGGGGGATTGTGTGTGGAGCCATGCCAGGT

Trifolium pratense cDNA clone:RCC03705.
BB931844.1:531-550

TGTAGGGTTGTTGTTGTTGTTGTTGTTGGT531ATTGTTGGGGGATTGTGTGTGGAGCCATGCCAGGTCCTCCAGGTTGCATC

Trifolium pratense cDNA clone:RCC05120.
BB933045.1:545-564

TGTAGGGTTGTTGTTGTTGTTGTTGTTGGT545ATTGTTGGGGGATTGTGTGTGGAGCCATGCCAGGTCCTCCAGGTTGCATC

Trifolium pratense cDNA clone:RCC11272.
BB938066.1:531-550

TGTAGGGTTGTTGTTGTTGTTGTTGTTGGT531ATTGTTGGGGGATTGTGTGTGGAGCCATGCCAGGTCCTA

Data Export:

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Debug Info:

0.009 | 0.009 | search_start;
0.130 | 0.121 | search_plus_done; http://172.18.8.135:50400/match?q=ACACACAATCCCCCAACAAT&k=0&no_gap=0&offset=0&limit=50
0.215 | 0.085 | search_minus_done; http://172.18.8.135:50400/match?q=ATTGTTGGGGGATTGTGTGT&k=0&no_gap=0&offset=0&limit=45
0.231 | 0.016 | cgi_end;

Summary:

Results:

Data Export:

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