GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 00:45:53, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KBrH089E10R Brassica rapa BAC library KBrH Brassica rapa genomic clone KBrH089E10, genomic survey sequence.
DU114063.1:633-652
TTTTGAGGTAAATGGTTATTTCTAGAGCGC633ACACAGACGTGGTTAGTGTGGAGAAGAGGGGACGGATCTCTCTCTCTCTC
KBrH044B19F KBrH, Brassica rapa HindIII BAC library Brassica rapa subsp. pekinensis genomic clone KBrH044B19, genomic survey sequence.
DX908400.1:738-757
TTTTGAGGTAAATGGTTATTTCTAGAGCGC738ACACAGACGTGGTTAGTGTGGAGAAGAGGGGACGGATCTCTCTCTCTCTC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH023N19, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC241111.1:69530-69549
TTTTGAGGTAAATGGTTATTTCTAGAGCGC69530ACACAGACGTGGTTAGTGTGGAGAAGAGGGGACGGATCTCTCTCTCTCTC
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:27398088-27398107
TTTTGAGGTAAATGGTTATTTCTAGAGCGC27398088ACACAGACGTGGTTAGTGTGGAGAAGAGGGGACGGATCTCTCTCTCTCTC
Brassica napus genome assembly, chromosome: A03.
HG994357.1:27419045-27419064
TGAGGTAAAAATGGTTATTTTCCAGAGCAC27419045ACACAGACGTGGTTAGTGTGGAGAAGAGGGATCTCTCTCTCTCTCTCTCT
Brassica rapa genome, scaffold: A03.
LR031572.1:27287201-27287220
GAGGTAAAAATGGTTATTTATTTCTAGAGC27287201ACACAGACGTGGTTAGTGTGGGAAGAGGGATCTCTCTCTCTCTCTCTCTC
Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:53927084-53927103
GAGGAGAAACGTTTGTTTCCAGAGGTATAC53927084ACACAGACGTGGTTAGTGTGGAGAAGGGAGAGAGATCTATTTGTGTTTGT
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:27414308-27414327
GAGGTAAAAATGGTTATTTATTTCTAGAGC27414308ACACAGACGTGGTTAGTGTGGGAAGAGGGATCTCTCTCTCTCTCTCTCTC
BOGGW24TR BOGG Brassica oleracea genomic clone BOGGW24, genomic survey sequence.
BH562021.1:632-651
ACAAACACAAATAGGTCTCTCTCCCTTCTC632CACACTAACCACGTCTGTGTGTATACCTCTGGAAACAAACTTTTCTCCCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ACACAGACGTGGTTAGTGTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ACACAGACGTGGTTAGTGTG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.155 | 0.147 | search_plus_done; http://172.18.8.135:50400/match?q=ACACAGACGTGGTTAGTGTG&k=0&no_gap=0&offset=0&limit=50
0.182 | 0.027 | search_minus_done; http://172.18.8.135:50400/match?q=CACACTAACCACGTCTGTGT&k=0&no_gap=0&offset=0&limit=42
0.183 | 0.001 | cgi_end;

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