GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 13:56:28, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043F18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189351.2:14173-14192
AATAAAACTTTTCTTGTTTGTTTGTTGGAA14173ACACAGGTCACTGTTAACGCGTCAAATATATATCCAAAAGATGTGGAAGC
Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 882 unordered pieces.
FJ789639.1:617430-617449
AATAAAACTTTTCTTGTTTGTTTGTTGGAA617430ACACAGGTCACTGTTAACGCGTCAAATATATATCCAAAAGATGTGGAAGC
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:838691-838710
TGAAACTTTTCTTGTTTTTATTTGTTGGAA838691ACACAGGTCACTGTTAACGCTTCAAATATATATCCAAAAGATGTGGAAGC
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:68844562-68844581
GCTTCCACATCTTTTGGGTATATATTTGAA68844562GCGTTAACAGTGACCTGTGTTTCCAACAAATAAAAACAAGAAAAGTTTCA
Brassica napus genome assembly, chromosome: A09.
HG994363.1:52789426-52789445
GCTTCCACATCTTTTGGGTATATATTTGAC52789426GCGTTAACAGTGACCTGTGTTTCCAACAAACAAACAAGAAAAGTTTCATT
Brassica napus genome assembly, chromosome: C08.
HG994372.1:40844070-40844089
GCTTCCACATCTTTTGGATATATATTTGAA40844070GCGTTAACAGTGACCTGTGTTTCCAACAAATAAAAACAAGAAAAGTTTCA
Brassica rapa genome, scaffold: A09.
LR031568.1:56889420-56889439
GCTTCCACATCTTTTGGGTATATATTTGAC56889420GCGTTAACAGTGACCTGTGTTTCCAACAAACAAACAAGAAAAGTTTCATT
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:50118633-50118652
GCTTCCACATCTTTTGGATATATATTTGAA50118633GCGTTAACAGTGACCTGTGTTTCCAACAAATAAAAACAAGAAAAGTTTCA
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:67413442-67413461
GCTTCCACATCTTTTGGGTATATATTTGAC67413442GCGTTAACAGTGACCTGTGTTTCCAACAAACAAACAAGAAAAGTTTCATT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ACACAGGTCACTGTTAACGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ACACAGGTCACTGTTAACGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.110 | 0.101 | search_plus_done; http://172.18.8.135:50400/match?q=ACACAGGTCACTGTTAACGC&k=0&no_gap=0&offset=0&limit=50
0.163 | 0.053 | search_minus_done; http://172.18.8.135:50400/match?q=GCGTTAACAGTGACCTGTGT&k=0&no_gap=0&offset=0&limit=47
0.168 | 0.004 | cgi_end;

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