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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 19:31:28, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Daucus carota subsp. sativus cultivar DH1 chromosome 1.
CP093343.1:32736466-32736484
TTAACAATCAGAATGAGTTACACAGTACTC32736466ACACTGCAACACGATCAGGTGTGAATTCTTTAGTAGCAGCTTTATACTC
Pulicaria dysenterica genome assembly, chromosome: 9.
OX359296.1:40553865-40553883
AGCTTTTAAAAACAGCAACAAATTATACTC40553865ACACTGCAACACGATCAGGGGTGAAACCACCAGTAGCAGCTTTGTACTC
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 9.
OX392555.1:42793380-42793398
AAAAAGAGGAGAGAGAAAGAGAGAGTACAG42793380ACACTGCAACACGATCAGGATTAAAAGCACCAGTAGAAGAGTTATACTC
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 9.
OX392564.1:46504953-46504971
AAAAAGAGGAGAGAGAAAGAGAGAGTACAG46504953ACACTGCAACACGATCAGGATTAAAAGCACCAGTAGAAGAGTTATACTC
Pseudognaphalium luteoalbum genome assembly, chromosome: 7.
OY730198.1:81611169-81611187
AATTAACAAAGAAAAAAGGAAGTAAAGCTT81611169ACACTGCAACACGATCAGGCGTGAACCCTCCAGTGGCAGCCTTGTACTC
Calendula officinalis genome assembly, chromosome: 4.
OY970823.1:55665653-55665671
AACTTGTGAAAAGATCAACGAACAAAACTC55665653ACACTGCAACACGATCAGGGGTGAAACCCCCAGTAGCAGCCTTGTATTC
Calendula officinalis genome assembly, chromosome: 15.
OY970834.1:31381810-31381828
AACTTTTGAAAAGATCAACAAGCAAGACTC31381810ACACTGCAACACGATCAGGGGTGAAACCACCAGTAGCGGCCTTGTATTC
Gnaphalium uliginosum genome assembly, chromosome: 5.
OZ005684.1:7276794-7276812
CTTGCAACAAACAGGAGTTAGTCAGGACTC7276794ACACTGCAACACGATCAGGAGTAAAACCACCAGTAGCAGCCTTATACTC
Herbaspirillum sp. meg3 chromosome, complete genome.
CP022736.1:2138298-2138316
TTGCACTGTTGCACGCGCTATGCACACGCA2138298ACACTGCAACACGATCAGGGAGATAAGCAGGAGCGGCGGCTACAACCGG
E011860-024-003-L19-SP6 MPIZ-ADIS-024-inflorescence Beta vulgaris cDNA clone 024-003-L19 5-PRIME, mRNA sequence.
BQ584240.1:511-529
GAGTATAACTCTTCTACTGGTGCTTTTAAT511CCTGATCGTGTTGCAGTGTATTGCAAGTGTGAGATGCCATACAATCCGG
TKN095G10_634754 Taraxacum kok-saghyz root cDNA library Taraxacum kok-saghyz cDNA clone TKN095G10 5, mRNA sequence.
DR398949.1:484-502
GAGTACAAGGCTGCTACCGGCGGTTTCACA484CCTGATCGTGTTGCAGTGTACTGCAAATGTGAAATGCCCTACAATCCTG
CLLX15130.b2_D15.ab1 CLL(XYZ) lettuce saligna Lactuca saligna cDNA clone CLLX15130, mRNA sequence.
DW048544.1:664-682
GAGTACAAGGCTGCTACCGGTGGTTTCACC664CCTGATCGTGTTGCAGTGTACTGCAAATGTGAAATGCCCTACAACCCTG
CLLY2054.b1_L09.ab1 CLL(XYZ) lettuce saligna Lactuca saligna cDNA clone CLLY2054, mRNA sequence.
DW062409.1:668-686
GAGTACAAGGCTGCTACCGGTGGTTTCACC668CCTGATCGTGTTGCAGTGTACTGCAAATGTGANATGCCCTACAACCCTG
CLSY3636.b1_H21.ab1 CLS(XYZ) lettuce sativa Lactuca sativa cDNA clone CLSY3636, mRNA sequence.
DW136078.1:658-676
GAGTACAAGGCTGCTACCGGTGGTTTCACC658CCTGATCGTGTTGCAGTGTGAGTCCTACATCTTGCTCTTAATTCTGACA
CLVX8322.b1_C18.ab1 CLV(XYZ) lettuce virosa Lactuca virosa cDNA clone CLVX8322, mRNA sequence.
DW156285.1:666-684
GAGTACAAGGCTGCTACCGGTGGTTTCACC666CCTGATCGTGTTGCAGTGTACTGCAAATGTGAAATGCCCTACAACCCTG
CLSM16116.b1_H22.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSM16116, mRNA sequence.
DY965218.1:668-686
GAGTACAAGGCTGCTACCGGTGGTTTCACC668CCTGATCGTGTTGCAGTGTACTGCAAATGTGAAATGCCCTACAACCCTG
CLSM1894.b1_L18.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSM1894, mRNA sequence.
DY967849.1:642-660
GAGTACAAGGCTGCTACCGGTGGTTTCACC642CCTGATCGTGTTGCAGTGTACTGCAAATGTGAAATGCCCTACAACCCTG
CCIL6888.b1_P18.ab1 CCI(LMS) chicory Cichorium intybus cDNA clone CCIL6888, mRNA sequence.
EH682156.1:619-637
GAATACAAGGCTGCCACCGGTGGTTTCACC619CCTGATCGTGTTGCAGTGTACTGCAAATGTGAAATGCCCTACAATCCTG
TKN095G10 Taraxacum kok-saghyz root cDNA library (TKN) Taraxacum kok-saghyz cDNA clone TKN095G10, mRNA sequence.
GO671306.1:495-513
GAGTACAAGGCTGCTACCGGCGGTTTCACA495CCTGATCGTGTTGCAGTGTACTGCAAATGTGAAATGCCCTACAATCCTG
TSA: Lactuca sativa CLC_LTR_V1A_21075 mRNA sequence.
JI588987.1:684-702
GAGTACAAGGCTGCTACCGGTGGTTTCACC684CCTGATCGTGTTGCAGTGTACTGCAAATGTGAAATGCCCTACAACCCTG
TSA: Lactuca sativa Letassy_A1_32467 mRNA sequence.
JI599134.1:666-684
GAGTACAAGGCTGCTACCGGTGGTTTCACC666CCTGATCGTGTTGCAGTGTACTGCAAATGTGAAATGCCCTACAACCCTG
TSA: Lactuca serriola Serrassy_T_P2_19677 mRNA sequence.
JO035700.1:720-738
GAGTACAAGGCTGCTACCGGTGGTTTCACC720CCTGATCGTGTTGCAGTGTACTGCAAATGTGAAATGCCCTACAACCCTG
TSA: Lactuca serriola Serrassy_T_P2_47038 mRNA sequence.
JO066482.1:5-23
CACC5CCTGATCGTGTTGCAGTGTGAGTCCTACAACTTGCTCTTAATTTTGACA
Lactuca saligna genome assembly, chromosome: 9.
OX465085.1:140906918-140906936
GAGTACAAGGCTGCTACCGGTGGTTTCACC140906918CCTGATCGTGTTGCAGTGTGAGTCCTACATCTTGCTCTTAAATTTGACA
Pseudognaphalium luteoalbum genome assembly, chromosome: 3.
OY730194.1:118490994-118491012
GAGTATAAGGCTGCTACAGGTGGTTTTACT118490994CCTGATCGTGTTGCAGTGTGAGTCCTAAAATTAACTCATGTTTGTTGCA
Logfia minima genome assembly, chromosome: 5.
OY992767.1:32410618-32410636
GAGTATAAGGCTGCTACAGGTGGTTTTACT32410618CCTGATCGTGTTGCAGTGTGAGTCCTAATTAACTCTGTTTGTTGCAAGT
Logfia minima genome assembly, chromosome: 11.
OY992773.1:28431799-28431817
GAGTATAAGGCTGCTACAGGTGGTTTTACT28431799CCTGATCGTGTTGCAGTGTGAGTCCTAATTAACGCTGTTTGTTGCAAGT
Agriotes lineatus genome assembly, chromosome: 4.
OW679197.1:97623440-97623458
TGATCAATCGTCAAGCCATTTTCCAGTTGT97623440CCTGATCGTGTTGCAGTGTGTAATCTGTTTATTTCTGTCTCTCCCATTA
Labia minor genome assembly, chromosome: X.
OY720348.1:61917079-61917097
GGAATTAAATGACAGTAAAATGCATTTCCT61917079CCTGATCGTGTTGCAGTGTTTCGTAAAATAATTAATATCATAAACTACT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ACACTGCAACACGATCAGG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ACACTGCAACACGATCAGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.339 | 0.331 | search_plus_done; http://172.18.8.135:50400/match?q=ACACTGCAACACGATCAGG&k=0&no_gap=0&offset=0&limit=50
1.053 | 0.713 | search_minus_done; http://172.18.8.135:50400/match?q=CCTGATCGTGTTGCAGTGT&k=0&no_gap=0&offset=0&limit=41
1.066 | 0.013 | cgi_end;

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