GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 05:46:53, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

BONII81TF BO_1.6_2_KB_tot Brassica oleracea genomic clone BONII81, genomic survey sequence.
BZ473636.1:345-364
CTGAAAAGAAATTGCAAGAGACCAAAAAAA345ACAGAAGCTTATGGAGCACCTTAGTGGAAGTTCCTTCCTAAAGAATAGAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084M06, complete sequence.
AC189491.2:4701-4720
AAAGAGATCGCAGGAGACCAAAAAGAAAAA4701ACAGAAGCTTATGGAGCACCTTAGTGGAAGCTCCTTCCTAAAGAATAGAT
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:20189938-20189957
AAAGAGATTGCAGGAGACCAAAAAGAAAAA20189938ACAGAAGCTTATGGAGCACCTTAGTGGAAGCTCCTTCCTAAAGAATAGAT
Brassica napus genome assembly, chromosome: A03.
HG994357.1:20165193-20165212
AAGAGATTGCAGGAGACCAAAAAGAAAAAA20165193ACAGAAGCTTATGGAGCACCTTAGTGGAAGTTCCTTCCTAAAGAATAGAT
Brassica napus genome assembly, chromosome: C03.
HG994367.1:33331687-33331706
CTGAAAAGAAATTGCAAGAGACCAAAAAAA33331687ACAGAAGCTTATGGAGCACCTTAGTGGAAGTTCCTTCCTAAAGAATAGAT
Brassica rapa genome, scaffold: A03.
LR031572.1:19942198-19942217
AAGAGATTGCAGGAGACCAAAAAGAAAAAA19942198ACAGAAGCTTATGGAGCACCTTAGTGGAAGCTCCTTCCTAAAGAATAGAT
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:33167654-33167673
CTGAAAAGAAATTGCAAGAGACCAAAAAAA33167654ACAGAAGCTTATGGAGCACCTTAGTGGAAGTTCCTTCCTAAAGAATAGAT
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:20068875-20068894
AAGAGATTGCAGGAGACCAAAAAGAAAAAA20068875ACAGAAGCTTATGGAGCACCTTAGTGGAAGCTCCTTCCTAAAGAATAGAT
BOT01-100J10TR BOT01 Brassica oleracea genomic clone BOT01-100J10, genomic survey sequence.
FI748966.1:635-654
ATCTATTCTTTAGGAAGGAACTTCCACTAA635GGTGCTCCATAAGCTTCTGTTTTTTTTGGTCTCTTGCAATTTCTTTTCAG
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:45863028-45863047
ATCTATTCTTTAGGAAGGAACTTCCACTAA45863028GGTGCTCCATAAGCTTCTGTTTTTTTTGGTCTCTTGCAATTTCTTTTCAG
Paspalum notatum var. saurae isolate R1 chromosome 06.
CP144750.1:41166882-41166901
CCCACCGTATGATGGAACTAGCATGTGGTC41166882GGTGCTCCATAAGCTTCTGTTGTGGCAGCATTAACGAGCGAAACCAACAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ACAGAAGCTTATGGAGCACC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ACAGAAGCTTATGGAGCACC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.119 | 0.110 | search_plus_done; http://172.18.8.135:50400/match?q=ACAGAAGCTTATGGAGCACC&k=0&no_gap=0&offset=0&limit=50
0.183 | 0.064 | search_minus_done; http://172.18.8.135:50400/match?q=GGTGCTCCATAAGCTTCTGT&k=0&no_gap=0&offset=0&limit=42
0.185 | 0.002 | cgi_end;

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