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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-09 14:44:07, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Streptopelia turtur genome assembly, chromosome: 1.
LR594551.2:74239625-74239644
CTTCCAGTCTTACTCTGGACTACACACATA74239625ACAGAAGGATGTTCCTGTCCCAATGAACTGCTCAGCTCATCTCAGACCAC
Haliaeetus albicilla genome assembly, chromosome: 6.
OX381642.1:38664228-38664247
GCTCCAGTCTTACTCTGGACTCCACACGTA38664228ACAGAAGGATGTTCCTGTCCCAGAGAGCTGCTCAGCTCATCCCGGACCAC
63-E023030-021-019-M15-frev ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022M1519Q, mRNA sequence.
CX190623.1:611-630
AGCTATCGCTGGCATCATGTCTTCCCAACA611ACAGAAGGATGTTCCTGTCCAACGGGATTTCTTCGACGAGAAAGACCTCG
Brassica oleracea var. viridis mRNA, clone: KALE-014F19, 3' end sequence.
DK520653.1:458-477
AGCTATCGCTGGCATCATGTTTTCCCAACA458ACAGAAGGATGTTCCTGTCCAACGGGATTTTTTTGACGAGAAAGACCTCG
Brassica oleracea var. viridis mRNA, clone: KALE-072I14, 3' end sequence.
DK542876.1:430-449
AGCTATCGCTGGCATCATGTCTTCCCAACA430ACAGAAGGATGTTCCTGTCCAACGGGATTTTTTCGACGAGAAAGACCTCG
Brassica oleracea var. viridis mRNA, clone: KALE-079H17, 3' end sequence.
DK545527.1:447-466
AGCTATCGCTGGCATCATGTCTTCCCAACA447ACAGAAGGATGTTCCTGTCCAACGGGATTTCTTCGACGAGAAAGACCTCG
Brassica oleracea var. viridis mRNA, clone: KALE-093H04, 3' end sequence.
DK550868.1:458-477
AGCTATCGCTGGCATCATGTCTTCCCAACA458ACAGAAGGATGTTCCTGTCCAACGGGATTTTTTCGACGAGAAAGACCTCG
BNQA_UP_083_A11_01JUN2005_095 Brassica napus BNQA Brassica napus cDNA 5', mRNA sequence.
EE552996.1:215-234
AGCTATCGCTGGCATCATGTCTTCCCAACA215ACAGAAGGATGTTCCTGTCCAACGGGATTTCTTCGACGAGAAAGACCTCG
JKBNM4_T7_005_E03_12FEB2004_023 JKBNM4 Brassica napus cDNA 3', mRNA sequence.
ES269959.1:431-450
AGCCATTGCTGGCATTATGTCTTCCCAACA431ACAGAAGGATGTTCCTGTCCAAAGGGATTTCTACGACGAGAAAGACCTCA
24RDBNH_UP_149_F12_13DEC2006_086 Brassica napus 24RDBNH Brassica napus cDNA 5', mRNA sequence.
ES919919.1:312-331
AGCTATCGCTGGCATCATGTCTTCCCAACA312ACAGAAGGATGTTCCTGTCCAACGGGATTTCTTCGACGAGAAAGACCTCG
37RDBRH_UP_104_E12_24JAN2006_088 Brassica rapa 37RDBRH Brassica rapa cDNA 5', mRNA sequence.
ES933925.1:317-336
AGCCATTGCTGGCATTATGTCTTCCCAACA317ACAGAAGGATGTTCCTGTCCAAAGGGATTTCTACGACGAGAAAGACCTCA
9RDBNGA_UP_156_F07_11MAR2006_053 Brassica napus 9RDBNGA Brassica napus cDNA 5', mRNA sequence.
ES956793.1:215-234
AGCCATTGCTGGCATCATGTCTTCCCAACA215ACAGAAGGATGTTCCTGTCCAAAGGGATTTCTATGACGAGAAAGACCTCA
9RDBNGA_UP_172_E12_11MAR2006_088 Brassica napus 9RDBNGA Brassica napus cDNA 5', mRNA sequence.
ES957954.1:328-347
AGCCATTGCTGGCATTATGTCTTCCCAACA328ACAGAAGGATGTTCCTGTCCAAAGGGATTTCTACGACGAGAAAGACCTCA
RR4AU11TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EV568143.1:402-421
AGTCATTGCTGGCATCATGTCTTCCCAACA402ACAGAAGGATGTTCCTGTCCAAAGGGATTTCTTCGACGAGAAAGATCTCA
BR033882 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-044B09 5', mRNA sequence.
EX049238.1:221-240
AGCCATTGCTGGCATTATGTCTTCCCAACA221ACAGAAGGATGTTCCTGTCCAAAGGGATTTCTACGACGAGAAAGACCTCA
BR057601 root cDNA library KBRT Brassica rapa subsp. pekinensis cDNA clone KBRT-009G09 5', mRNA sequence.
EX072957.1:805-824
AGCCATTGCTGGCATTATGTCTTCCCAACA805ACAGAAGGATGTTCCTGTCCAAAGGGATTTCTACGACGAGAAAGACCTCA
BR086485 root cDNA library KFRT Brassica rapa subsp. pekinensis cDNA clone KFRT-028B12 5', mRNA sequence.
EX100195.1:237-256
AGCCATTGCTGGCATTATGTCTTCCCAACA237ACAGAAGGATGTTCCTGTCCAAAGGGATTTCTACGACGAGAAAGACCTCA
RR1DI75TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EY898346.1:476-495
AGCCATCGCTGGCATCATGTCTTCACAACA476ACAGAAGGATGTTCCTGTCCAAAGGGATTTCTTCGACGAGAAAGACCTCG
RR1GF73TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
FD963487.1:202-221
AGCCATCGCTGGCATCATGTCTTCACAACA202ACAGAAGGATGTTCCTGTCCAAAGGGATTTCTTCGACGAGAAAGACCTCG
BNAOV1GH_T3_055_H02_14SEPT2007_002 BNAOV1GH Brassica napus cDNA 5', mRNA sequence.
GR446453.1:71-90
AGCTATCGCTGGCATCATGTCTTCCCAACA71ACAGAAGGATGTTCCTGTCCAACGGGATTTCTTCGACGAGAAAGACCTCG
TSA: Raphanus sativus var. sativus RNA, contig: WG3_12004.
FX669358.1:1570-1589
AGTCATTGCTGGCATCATGTCTTCCCAGCA1570ACAGAAGGATGTTCCTGTCCAAAGGGATTTCTTCGACGAGAAAGATCTCA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_12507.
FX729382.1:1492-1511
AGCCATTGCTGGCATTATGTCTTCCCAACA1492ACAGAAGGATGTTCCTGTCCAAAGGGATTTCTACGACGAGAAAGACCTCA
TSA: Pachycladon cheesemanii 45399_538_5452_5_41.Pachleaf mRNA sequence.
JP979422.1:231-250
AGCCATTGCTGGAATCATGTCTACCCAACA231ACAGAAGGATGTTCCTGTCCAAAGGGATTTCTTCGACGAGAAAGACCTCA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS012H18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189654.2:56713-56732
AGCCATTGCTGGCATTATGTCTTCCCAACA56713ACAGAAGGATGTTCCTGTCCAAAGGGATTTCTACGACGAGAAAGACCTCA
Brassica rapa subsp. pekinensis clone KBrH107L05, complete sequence.
FP236819.1:62781-62800
AGCCATTGCTGGCATTATGTCTTCCCAACA62781ACAGAAGGATGTTCCTGTCCAAAGGGATTTCTACGACGAGAAAGACCTCA
Brassica napus cultivar Xiang5A chromosome 12.
CP123887.1:11989480-11989499
AGCCATTGCTGGCATCATGTCTTCCCAACA11989480ACAGAAGGATGTTCCTGTCCAAAGGGATTTCTACGACGAGAAAGACCTCA
Brassica napus cultivar Xiang5A chromosome 12.
CP123887.1:25099038-25099057
AGCTATCGCTGGCATCATGTCTTCCCAACA25099038ACAGAAGGATGTTCCTGTCCAACGGGATTTCTTCGACGAGAAAGACCTCG
Capsella bursa-pastoris isolate WGS_leaf chromosome 1.
CP144183.1:22701856-22701875
AGCCATTGCTGGAATTATGTCTACCCAACA22701856ACAGAAGGATGTTCCTGTCCAAAGAGATTTCTATGACGAGAAAGACCTCA
Brassica napus genome assembly, chromosome: C06.
HG994370.1:11503164-11503183
AGCCATTGCTGGCATCATGTCTTCCCAACA11503164ACAGAAGGATGTTCCTGTCCAAAGGGATTTCTATGACGAGAAAGACCTCA
Brassica napus genome assembly, chromosome: C06.
HG994370.1:18853456-18853475
AGCTATCGCTGGCATCATGTCTTCCCAACA18853456ACAGAAGGATGTTCCTGTCCAACGGGATTTCTTCGACGAGAAAGACCTCG
Brassica oleracea HDEM genome, scaffold: C6.
LR031880.1:8297026-8297045
AGCCATTGCTGGCATCATGTCTTCCCAACA8297026ACAGAAGGATGTTCCTGTCCAAAGGGATTTCTACGACGAGAAAGACCTCA
Brassica oleracea HDEM genome, scaffold: C6.
LR031880.1:15676974-15676993
AGCTATCGCTGGCATCATGTCTTCCCAACA15676974ACAGAAGGATGTTCCTGTCCAACGGGATTTCTTCGACGAGAAAGACCTCG
Thlaspi arvense genome assembly, chromosome: 1.
OU466857.2:56995695-56995714
AGCCATTGCTGGCATCATGTCGTCCCAACA56995695ACAGAAGGATGTTCCTGTCCAAAGGGATTTCTTCGACGAGAAGGAGCTCA
Raphanus sativus genome assembly, chromosome: 1.
OY743207.1:31879184-31879203
AGTCATTGCTGGCATCATGTCTTCCCAACA31879184ACAGAAGGATGTTCCTGTCCAAAGGGATTTCTTCGACGAGAAAGATCTCA
Raphanus sativus genome assembly, chromosome: 5.
OY743211.1:34715973-34715992
AGCCATCGCTGGCATCATGTCTTCACAACA34715973ACAGAAGGATGTTCCTGTCCAAAGGGATTTCTTCGACGAGAAAGACCTCG
Amphiduros pacificus genome assembly, chromosome: 3.
OX439002.1:2593331-2593350
TTTCCGGGCCAAGCGCATGACAGCCACCTG2593331ACAGAAGGATGTTCCTGTCCCCCCCGAGCTTCATGCGAGAAACATCATGT
Cyprinus carpio genome assembly, scaffold: LG29, chromosome: 29.
LN590689.1:6122690-6122709
CGACGCATTTTTGGCTCCTGGCCCTTTAAA6122690GGACAGGAACATCCTTCTGTCTCGCACAGTTTTGTAGGTGACGCGCGTCC
Aquila chrysaetos chrysaetos genome assembly, chromosome: 7.
LR606187.1:9221059-9221078
GTGGTCTGGGATGAGTCGAGCAGCTCTTTG9221059GGACAGGAACATCCTTCTGTTATGTGTGGAGTCCAGAGTAAGACTGGAGC
Accipiter gentilis genome assembly, chromosome: 21.
OV839382.1:9245329-9245348
GTGGTCTGGGATGAGCTGAGCAGCTCTTTG9245329GGACAGGAACATCCTTCTGTTATGTGTGGAGTCCAGAGTAAGACTGGAGC
OL2017F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL2017, mRNA sequence.
EH415777.1:251-270
CGAGGTCTTTCTCGTCGAAGAAATCCCGTT251GGACAGGAACATCCTTCTGTTGTTGGGAAGACATGATGCCAGCGATAGCT
65JKBNM0_T3_012_B11_17MAR2005_093 65JKBNM0 Brassica napus cDNA 5', mRNA sequence.
EL587682.1:270-289
CGAGGTCTTTCTCGTCGAAGAAATCCCGTT270GGACAGGAACATCCTTCTGTTGTTGGCAAGACATGATGCC
65JKBNMO_UP_043_C07_15JUL2006_059 65JKBNM0 Brassica napus cDNA 5', mRNA sequence.
EL590305.1:285-304
TGAGGTCTTTCTCGTCGTAGAAATCCCTTT285GGACAGGAACATCCTTCTGTTGTTGGGAAGACATGATGCCAGCAATGGCT
65JKBNMO_UP_061_G03_17JUL2006_019 65JKBNM0 Brassica napus cDNA 5', mRNA sequence.
EL591773.1:333-352
TGAGGTCTTTCTCGTCGTAGAAATCCCTTT333GGACAGGAACATCCTTCTGTTGTTGGGAAGACATAATGCCAGCAATGGCT
0124081 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV118769.1:301-320
TGAGGTCTTTCTCGTCGTAGAAATCCCTTT301GGACAGGAACATCCTTCTGTTGTTGGGAAGACATAATGCCAGCAATGGCT
0128442 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV123130.1:325-344
TGAGGTCTTTCTCGTCGTAGAAATCCCTTT325GGACAGGAACATCCTTCTGTTGTTGGGAAGACATAATGCCAGCAATGGCT
BR011832 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-043G12 5', mRNA sequence.
EX027188.1:303-322
TGAGGTCTTTCTCGTCGTAGAAATCCCTTT303GGACAGGAACATCCTTCTGTTGTTGGGAAGACATAATGCCAGCAATGGCT
BR057514 root cDNA library KBRT Brassica rapa subsp. pekinensis cDNA clone KBRT-008F06 5', mRNA sequence.
EX072870.1:327-346
TGAGGTCTTTCTCGTCGTAGAAATCCCTTT327GGACAGGAACATCCTTCTGTTGTTGGGAAGACATAATGCCAGCAATGGCT
BR058542 root cDNA library KBRT Brassica rapa subsp. pekinensis cDNA clone KBRT-021E08 5', mRNA sequence.
EX073898.1:295-314
TGAGGTCTTTCTCGTCGTAGAAATCCCTTT295GGACAGGAACATCCTTCTGTTGTTGGGAAGACATAATGCCAGCAATGGCT
RR1C347JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
EX751824.1:337-356
TGAGATCTTTCTCGTCGAAAAAATCCCTTT337GGACAGGAACATCCTTCTGTTGTTGGGAAGACATGATGCCAGCAATGACT
RR1DI75JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
EY894427.1:429-448
CGAGGTCTTTCTCGTCGAAGAAATCCCTTT429GGACAGGAACATCCTTCTGTTGTTGTGAAGACATGATGCCAGCGATGGCT
RR4DN89JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
EY919005.1:291-310
CAAGGTCTTTCTCGTCGAAGAAATCCCTTT291GGACAGGAACATCCTTCTGTTGTTGTGAAGACATGATGCCAGAGATGGCT
RS1G936JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
FD935236.1:342-361
TGAGATCTTTCTCGTCGAAAAAATCCCTTT342GGACAGGAACATCCTTCTGTTGTTGGGAAGACATGATGCCAGCAATGACT
RR1GF73JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
FD959786.1:453-472
CGAGGTCTTTCTCGTCGAAGAAATCCCTTT453GGACAGGAACATCCTTCTGTTGTTGTGAAGACATGATGCCAGCGATGGCT
TSA: Raphanus sativus var. sativus RNA, contig: WG3_15420.
FX667642.1:347-366
CGAGGTCTTTCTCGTCGAAGAAATCCCTTT347GGACAGGAACATCCTTCTGTTGTTGTGAAGACATGATGCCAGCGATGGCT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_14948.
FX694980.1:177-196
TGAGGTCTTTCTCGTCGTAGAAATCCCTTT177GGACAGGAACATCCTTCTGTTGTTGGGAAGACATAATGCCAGCAATGGCT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_4190.
FX731646.1:327-346
CAAGGTCTTTCTCGTCGAAGAAATCCCTTT327GGACAGGAACATCCTTCTGTTGTTGTGAAGACATGATGCCAGCGATGGCT
TSA: Raphanus sativus RS00573 mRNA sequence.
JT785120.1:832-851
TGAGATCTTTCTCGTCGAAGAAATCCCTTT832GGACAGGAACATCCTTCTGTTGTTGGGAAGACATGATGCCAGCAATGACT
TSA: Raphanus sativus RS00574 mRNA sequence.
JT785121.1:715-734
TGAGATCTTTCTCGTCGAAGAAATCCCTTT715GGACAGGAACATCCTTCTGTTGTTGGGAAGACATGATGCCAGCAATGACT
TSA: Raphanus sativus RS00576 mRNA sequence.
JT785123.1:312-331
TGAGATCTTTCTCGTCGAAGAAATCCCTTT312GGACAGGAACATCCTTCTGTTGTTGGGAAGACATGATGCCAGCAATGACT
TSA: Raphanus sativus RS20315 mRNA sequence.
JT804862.1:268-287
CGAGGTCTTTCTCGTCGAAGAAATCCCTTT268GGACAGGAACATCCTTCTGTTGTTGTGAAGACATGATGCCAGCGATGGCT
Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:2203070-2203089
TGAGGTCTTTCTCGTCGTAGAAATCCCTTT2203070GGACAGGAACATCCTTCTGTTGTTGGGAAGACATAATGCCAGCAATGGCT
Brassica napus genome assembly, chromosome: A06.
HG994360.1:1055368-1055387
TGAGGTCTTTCTCGTCGTAGAAATCCCTTT1055368GGACAGGAACATCCTTCTGTTGTTGGGAAGACATGATGCCAGCTATGGCT
Brassica rapa genome, scaffold: A06.
LR031569.1:1079811-1079830
TGAGGTCTTTCTCGTCGTAGAAATCCCTTT1079811GGACAGGAACATCCTTCTGTTGTTGGGAAGACATAATGCCAGCAATGGCT
Raphanus sativus genome assembly, chromosome: 4.
LR778313.1:9316977-9316996
CGAGGTCTTTCTCGTCGAAGAAATCCCTTT9316977GGACAGGAACATCCTTCTGTTGTTGTGAAGACATGATGCCAGCGATGGCT
Raphanus sativus genome assembly, chromosome: 7.
LR778316.1:1282975-1282994
TGAGATCTTTCTCGTCGAAGAAATCCCTTT1282975GGACAGGAACATCCTTCTGTTGTTGGGAAGACATGATGCCAGCAATGACT
Brassica rapa genome assembly, chromosome: A06.
LS974622.2:1173351-1173370
TGAGGTCTTTCTCGTCGTAGAAATCCCTTT1173351GGACAGGAACATCCTTCTGTTGTTGGGAAGACATAATGCCAGCAATGGCT

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