GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-15 15:13:40, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Mus musculus BAC clone RP24-70J8 from chromosome 13, complete sequence.
AC160114.2:36061-36080
TTCCGAGTTGTGAGAAACTTAACAGGCAGG36061ACAGCTTGAGAAATGTGGGGCCAGAAGACAGAATCCAGGAGTCCCAGATC
Micromys minutus genome assembly, chromosome: 1.
OZ004780.1:92254482-92254501
TCTGAGTTTCGAGAAACATAAACAGGCAGG92254482ACAGCTTGAGAAATGTGGGGCCAGGAGTCAGAATCCAGAAATCCCAGACC
Trifolium repens isolate ACLI19 chromosome 03_Occ.
CP125840.1:52965700-52965719
GAGGGAACGAGCAGAAACTGCTTGGAGGGA52965700ACAGCTTGAGAAATGTGGGGTTCTTTTTAAGCAGCTTCAAGAGTGCAATT
Trifolium repens isolate ACLI19 chromosome 03_Pall.
CP125841.1:55571830-55571849
GAGGGAACGAGCAGAAACTGCTTGGAGAGA55571830ACAGCTTGAGAAATGTGGGGTTCTTTTTAAGCAGCTTCAAGAGTGCAATT
Trifolium dubium genome assembly, chromosome: 2.
OX638063.1:40816712-40816731
GAGGGAACAAGCAGAAACTGCTTGGAGAAA40816712ACAGCTTGAGAAATGTGGGGTTCTTTTTAAGCAGCTTCAAGAGTGTAGTC
Mus musculus genome assembly, chromosome: 13.
OW971570.1:60298608-60298627
GATCTGGGACTCCTGGATTCTGTCTTCTGG60298608CCCCACATTTCTCAAGCTGTCCTGCCTGTTAAGTTTCTCACAACTCGGAA
Mus musculus genome assembly, chromosome: 13.
OW971585.1:60495934-60495953
GATCTGGGACTCCTGGATTCTGTCTTCTGG60495934CCCCACATTTCTCAAGCTGTCCTGCCTGTTAAGTTTCTCACAACTCGGAA
Mus musculus genome assembly, chromosome: 13.
OW971606.1:59238494-59238513
GATCTGGGACTCCTGGATTCTGTCTTCTGG59238494CCCCACATTTCTCAAGCTGTCCTGCCTGTTAAGTTTCTCACAACTCGGAA
Mus musculus domesticus genome assembly, chromosome: 13.
OW971618.1:58965702-58965721
GATCTGGGACTCCTGGATTCTGTCTTCTGG58965702CCCCACATTTCTCAAGCTGTCCTGCCTGTTAAGTTTCTCACAACTCGGAA
Mus musculus molossinus genome assembly, chromosome: 13.
OW971671.1:60956556-60956575
GATCTGGGACTCCTGGATTCTGTCTTCTGG60956556CCCCACATTTCTCAAGCTGTCCTGCCTGTTAAGTTTCTCACAACTCGGAA
Mus musculus genome assembly, chromosome: 13.
OW971732.1:60004645-60004664
GATCTGGGACTCCTGGATTCTGTCTTCTGG60004645CCCCACATTTCTCAAGCTGTCCTGCCTGTTAAGTTTCTCACAACTCGGAA
Mus musculus musculus genome assembly, chromosome: 13.
OW971774.1:59793280-59793299
GATCTGGGACTCCTGGATTCTGTCTTCTGG59793280CCCCACATTTCTCAAGCTGTCCTGCCTGTTAAGTTTCTCACAACTCGGAA
Mus musculus genome assembly, chromosome: 13.
OW971795.1:60244371-60244390
GATCTGGGACTCCTGGATTCTGTCTTCTGG60244371CCCCACATTTCTCAAGCTGTCCTGCCTGTTAAGTTTCTCACAACTCGGAA
Mus musculus genome assembly, chromosome: 13.
OW971817.1:61335076-61335095
GATCTGGGACTCCTGGATTCTGTCTTCTGG61335076CCCCACATTTCTCAAGCTGTCCTGCCTGTTAAGTTTCTCACAACTCGGAA
Mus musculus castaneus genome assembly, chromosome: 13.
OW971829.1:60678252-60678271
GATCTGGGACTCCTGGATTCTGTCTTCTGG60678252CCCCACATTTCTCAAGCTGTCCTGCCTGTTAAGTTTCTCACAACTCGGAA
Mus musculus genome assembly, chromosome: 13.
OW971865.1:60296492-60296511
GATCTGGGACTCCTGGATTCTGTCTTCTGG60296492CCCCACATTTCTCAAGCTGTCCTGCCTGTTAAGTTTCTCACAACTCGGAA
Mus musculus genome assembly, chromosome: 13.
OX389807.1:64395787-64395806
GATCTGGGACTCCTGGATTCTGTCTTCTGG64395787CCCCACATTTCTCAAGCTGTCCTGCCTGTTAAGTTTCTCACAACTCGGAA
Mus musculus genome assembly, chromosome: 13.
OX439026.1:70163084-70163103
GATCTGGGACTCCTGGATTCTGTCTTCTGG70163084CCCCACATTTCTCAAGCTGTCCTGCCTGTTAAGTTTCTCACAACTCGGAA
Trifolium repens mRNA, clone: WCC05p17_080, unspecified EST.
FY456056.1:428-447
AATTGCACTCTTGAAGCTGCTTAAAAAGAA428CCCCACATTTCTCAAGCTGTTCTCTCCAAGCAGTTTCTGCTCGTTCCCTC
Rattus norvegicus clone CH230-31P1, WORKING DRAFT SEQUENCE, 3 unordered pieces.
AC129444.5:161561-161580
ATCTGGGATTCCTGAATTCTAACTTCTGAC161561CCCCACATTTCTCAAGCTGTCCTGCCTGTTAGGTTTCTCACAACTCATAA
Trifolium repens isolate ACLI19 chromosome 02_Occ.
CP125838.1:27107596-27107615
AATTGCACTCTTGAAGCTGCTTAAAAAGAA27107596CCCCACATTTCTCAAGCTGTTCACTACAAGCAGTTTCTGCATGTTCCCTC
Trifolium dubium genome assembly, chromosome: 15.
OX638076.1:3269611-3269630
GACTACACTCTTGAAGCTGCTTAAAAAGAA3269611CCCCACATTTCTCAAGCTGTTTTCTCCAAGCAGTTTCTGCTTGTTCCCTC
Trifolium fragiferum genome assembly, chromosome: 6.
OX940794.1:43046823-43046842
AATTGCACTCTTGAAGCTGCTTAAAAAGAA43046823CCCCACATTTCTCAAGCTGTTCTCTCCAAGCAGTTTCTGCCCGTTCCCTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ACAGCTTGAGAAATGTGGGG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ACAGCTTGAGAAATGTGGGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.123 | 0.114 | search_plus_done; http://172.18.8.135:50400/match?q=ACAGCTTGAGAAATGTGGGG&k=0&no_gap=0&offset=0&limit=50
0.226 | 0.103 | search_minus_done; http://172.18.8.135:50400/match?q=CCCCACATTTCTCAAGCTGT&k=0&no_gap=0&offset=0&limit=45
0.238 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).