GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 02:48:24, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Acomys kempi genome assembly, chromosome: 2.
OU015356.1:94587573-94587592
GTTTCATGGTGGCACCTAGCACAAGAGTGC94587573ACAGGTGAAATAGCAGGAGCTGTAGAAGTGAAAGCATCAGTAGTTTAATG
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:4382805-4382824
CTAGGACTTTTCTGAGGGACAGGAGAGGCC4382805ACAGGTGAAATAGCAGGAGCTATACTTGGGCTAAGCTGATGATGATGATG
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_5753.
FX695598.1:1291-1310
AACCATCATCACCAGCTTAGCCCAAGTATA1291GCTCCTGCTATTTCACCTGTGGCCTCTCCTGTCCCTCAGAAAAGTCCTAG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_6867.
FX728853.1:1291-1310
AACCATCATCACCAGCTTAGCCCAAGTATA1291GCTCCTGCTATTTCACCTGTGGCCTCTCCTGTCCCTCAGAAAAGTCCTAG
TSA: Cannabis sativa PK24930.1_1.CasaPuKu mRNA sequence.
JP449928.1:1339-1358
CATCATCATCACCATCACAGTGCACATCTT1339GCTCCTGCTATTTCACCTGTACCTGCCAGCCAGAAAGGTTCACCTGCAAC
BOIDR10TR BO_1.4_1.6_KB_nuc Brassica oleracea genomic clone BOIDR10, genomic survey sequence.
CC954694.1:270-289
CATCATCATCATCAGCTTAGCCCAAGTATA270GCTCCTGCTATTTCACCTGTGGCCTCTCCTGTCCCTCAGAAAAGTCCTAG
Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:43051469-43051488
AACCATCATCACCAGCTTAGCCCAAGTATA43051469GCTCCTGCTATTTCACCTGTGGCCTCTCCTGTCCCTCAGAAAAGTCCTAG
Brassica napus genome assembly, chromosome: A01.
HG994355.1:28671915-28671934
AACCATCATCACCAGCTTAGCCCAAGTATA28671915GCTCCTGCTATTTCACCTGTGGCCTCTCCTGTCCCTCAGAAAAGTCCTAG
Brassica rapa genome, scaffold: A01.
LR031571.1:34690809-34690828
CATCATCATCATCAGCTTAGCCCGAGTATA34690809GCTCCTGCTATTTCACCTGTGGCCTCTCCTGTCCCTCAGAAAAGTCCTAG
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:47717910-47717929
CATCATCATCATCAGCTTAGCCCAAGTATA47717910GCTCCTGCTATTTCACCTGTGGCCTCTCCTGTCCCTCAGAAAAGTCCTAG
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:35417035-35417054
CATCATCATCATCAGCTTAGCCCGAGTATA35417035GCTCCTGCTATTTCACCTGTGGCCTCTCCTGTCCCTCAGAAAAGTCCTAG
Argyresthia goedartella genome assembly, chromosome: 8.
OX463814.1:37109882-37109901
TAAGGCGCTTTATTTTTTATTCGTGACACT37109882GCTCCTGCTATTTCACCTGTCATGGCCTTGGCCCCATCTGTAATTAAAGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ACAGGTGAAATAGCAGGAGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ACAGGTGAAATAGCAGGAGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.102 | 0.093 | search_plus_done; http://172.18.8.135:50400/match?q=ACAGGTGAAATAGCAGGAGC&k=0&no_gap=0&offset=0&limit=50
0.160 | 0.058 | search_minus_done; http://172.18.8.135:50400/match?q=GCTCCTGCTATTTCACCTGT&k=0&no_gap=0&offset=0&limit=48
0.166 | 0.007 | cgi_end;

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