GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 07:19:58, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Cajanus cajan cultivar UPAS 120 contig27119.UPAS mRNA sequence.
EZ644836.1:1127-1146
CTTTGGAAGGCCCACGGTCCAGCTAATCAA1127ACAGTACACCACACCCACGAATAAATGGATAACAGATACGAAGTATGGAT
TSA: Arachis hypogaea CL1Contig200.Arhy mRNA sequence.
EZ721184.1:1156-1175
CTTAGGAAGGCCCACGGTCCAGCTCACCAA1156ACAGTACACCACACCCACGAACAAATGAATAACCGACACGAAGTATGGGT
TSA: Arachis hypogaea Ahy.Unigene1503 mRNA sequence.
JR542164.1:1097-1116
CTTAGGAAGGCCCACGGTCCAGCTCACCAA1097ACAGTACACCACACCCACGAACAAATGAATAACCGACACGAAGTATGGGT
Arachis hypogaea DNA, clone: NYHA00A35, cultivar: Nakateyutaka.
DE998919.1:21-40
CCCACGGTCCAGCTCACCAA21ACAGTACACCACACCCACGAACAAATGAATAACCGACACGAAGCTGCACA
VUK278A21.F VUK Phaseolus vulgaris genomic 5', genomic survey sequence.
JY749668.1:418-437
CTTAGGAAGGCCCACGGTCCAGCTCAACAA418ACAGTACACCACACCCACGAATAAATGGATAACCGATACGAAGCTGCATA
Arachis hypogaea cultivar Shitouqi chromosome A03.
CP030985.1:129109906-129109925
CTTAGGAAGGCCCACGGTCCAGCTCACCAA129109906ACAGTACACCACACCCACGAACAAATGAATAACCGACACGAAGCTGCACA
Arachis hypogaea cultivar Shitouqi chromosome B03.
CP030995.1:129969680-129969699
CTTAGGAAGGCCCACGGTCCAGCTCACCAA129969680ACAGTACACCACACCCACGAACAAATGAATAACCGACACGAAGCTGCACA
Vigna unguiculata cultivar Xiabao 2 chromosome Vu03.
CP039346.1:71390236-71390255
CTTAGGAAGGCCCACGGTCCAGCTCAACAA71390236ACAGTACACCACACCCACGAATAAATGGATGACGGATACGAAGCTGCATA
Arachis ipaensis cultivar K30076 chromosome 03.
CP049894.1:127612749-127612768
CTTAGGAAGGCCCACGGTCCAGCTCACCAA127612749ACAGTACACCACACCCACGAACAAATGAATAACCGACACGAAGCTGCACA
PVEPSE3021G05.g Common bean seedling EST Library inoculated with anthracnose - PVEPSE3 Phaseolus vulgaris cDNA clone PVEPSE3021G05 5', mRNA sequence.
CB542600.1:438-457
ATCCGTACTTCGTATCGGTTATCCATTTAT438TCGTGGGTGTGGTGTACTGTTTGTTGAGCTGGACCGTGGGCCTTCCTAAG
PVEPSE3029J12.g Common bean seedling EST Library inoculated with anthracnose - PVEPSE3 Phaseolus vulgaris cDNA clone PVEPSE3029J12 5', mRNA sequence.
CB543407.1:438-457
ATCCGTACTTCGTATCGGTTATCCATTTAT438TCGTGGGTGTGGTGTACTGTTTGTTGAGCTGGACCGTGGGCCTTCCTAAG
ALV_009A_B02 Phaseolus vulgaris leaf EST library PV_GEa Phaseolus vulgaris cDNA clone PV_GEa0009A_B02.b1 5', mRNA sequence.
CV528979.1:401-420
ATCCGTACTTCGTATCGGTTATCCATTTAT401TCGTGGGTGTGGTGTACTGTTTGTTGAGCTGGACCGTGGGCCTTCCTAAG
ALV_009C_G04 Phaseolus vulgaris leaf EST library PV_GEa Phaseolus vulgaris cDNA clone PV_GEa0009C_G04.b1 5', mRNA sequence.
CV529152.1:85-104
ATCCGTACTTCGTATCGGTTATCCATTTAT85TCGTGGGTGTGGTGTACTGTTTGTTGAGCTGGACCGTGGGCCTTCCTAAG
ALV_010A_H03 Phaseolus vulgaris leaf EST library PV_GEa Phaseolus vulgaris cDNA clone PV_GEa0010A_H03.b1 5', mRNA sequence.
CV529304.1:417-436
ATCCGTACTTCGTATCGGTTATCCATTTAT417TCGTGGGTGTGGTGTACTGTTTGTTGAGCTGGACCGTGGGCCTTCCTAAG
ALV_013D_F06 Phaseolus vulgaris leaf EST library PV_GEa Phaseolus vulgaris cDNA clone PV_GEa0013D_F06.b1 5', mRNA sequence.
CV530486.1:7-26
ATTTAT7TCGTGGGTGTGGTGTACTGTTTGTTGAGCTGGACCGTGGGCCTTCCTAAG
ALV_014B_G10 Phaseolus vulgaris leaf EST library PV_GEa Phaseolus vulgaris cDNA clone PV_GEa0014B_G10.b1 5', mRNA sequence.
CV530627.1:397-416
ATCCGTACTTCGTATCGGTTATCCATTTAT397TCGTGGGTGTGGTGTACTGTTTGTTGAGCTGGACCGTGGGCCTTCCTAAG
ALV_014D_F12 Phaseolus vulgaris leaf EST library PV_GEa Phaseolus vulgaris cDNA clone PV_GEa0014D_F12.b1 5', mRNA sequence.
CV530792.1:425-444
ATCCGTACTTCGTATCGGTTATCCATTTAT425TCGTGGGTGTGGTGTACTGTTTGTTGAGCTGGACCGTGGGCCTTCCTAAG
ALV_016D_B02 Phaseolus vulgaris leaf EST library PV_GEa Phaseolus vulgaris cDNA clone PV_GEa0016D_B02.b1 5', mRNA sequence.
CV531305.1:427-446
ATCCGTACTTCGTATCGGTTATCCATTTAT427TCGTGGGTGTGGTGTACTGTTTGTTGAGCTGGACCGTGGGCCTTCCTAAG
ALV_017A_C12 Phaseolus vulgaris leaf EST library PV_GEa Phaseolus vulgaris cDNA clone PV_GEa0017A_C12.b1 5', mRNA sequence.
CV531396.1:409-428
ATCCGTACTTCGTATCGGTTATCCATTTAT409TCGTGGGTGTGGTGTACTGTTTGTTGAGCTGGACCGTGGGCCTTCCTAAG
ALV_017B_D01 Phaseolus vulgaris leaf EST library PV_GEa Phaseolus vulgaris cDNA clone PV_GEa0017B_D01.b1 5', mRNA sequence.
CV531475.1:432-451
ATCCGTACTTCGTATCGGTTATCCATTTAT432TCGTGGGTGTGGTGTACTGTTTGTTGAGCTGGACCGTGGGCCTTCCTAAG
LVS_035_C07 Phaseolus vulgaris leaf EST library Phaseolus vulgaris cDNA 5', mRNA sequence.
CV533108.1:493-512
ATCCGTACTTCGTATCGGTTATCCATTTAT493TCGTGGGTGTGGTGTACTGTTTGTTGAGCTGGACCGTGGGCCTTCCTAAG
LVS_045_D12 Phaseolus vulgaris leaf EST library Phaseolus vulgaris cDNA 5', mRNA sequence.
CV533948.1:176-195
ATCCGTACTTCGTATCGGTTATCCATTTAT176TCGTGGGTGTGGTGTACTGTTTGTTGAGCTGGACCGTGGGCCTTCCTAAG
PvEST0239 Bean pod tissue cDNA Entry Library Phaseolus vulgaris cDNA clone BE-321 5' similar to Triose phosphate/phosphate translocator, chloroplast precursor (cTPT) (p36) (E30), mRNA sequence.
EG563074.1:440-459
ATCCGTACTTCGTATCGGTTATCCATTTAT440TCGTGGGTGTGGTGTACTGTTTGTTGAGCTGGACCGTGGGCCTTCCTAAG
GLE022_A01_008 Cyamopsis tetragonoloba (L.) Taub seeds at early developmental stage Cyamopsis tetragonoloba cDNA, mRNA sequence.
EG983248.1:444-463
ATCCATACTTCGTATCTGTGATCCATTTAT444TCGTGGGTGTGGTGTACTGTTTGCTGAGCTGGGCCGTGGGCCTTCCTAAG
GLE057_D07_029 Cyamopsis tetragonoloba (L.) Taub seeds at early developmental stage Cyamopsis tetragonoloba cDNA, mRNA sequence.
EG986807.1:417-436
ATCCATACTTCGTATCTGTGATCCATTTAT417TCGTGGGTGTGGTGTACTGTTTGCTGAGCTGGGCCGTGGGCCTTCCTAAG
GLE060_G11_042 Cyamopsis tetragonoloba (L.) Taub seeds at early developmental stage Cyamopsis tetragonoloba cDNA, mRNA sequence.
EG987162.1:452-471
ATCCATACTTCGTATCTGTGATCCATTTAT452TCGTGGGTGTGGTGTACTGTTTGCTGAGCTGGGCCGTGGGCCTTCCTAAG
C20L_73_E09_E002.g1 USDA-Tifton Peanut Library C20L Arachis hypogaea cDNA clone C20L-073_E09 5', mRNA sequence.
ES759589.1:436-455
ACCCATACTTCGTGTCGGTTATTCATTTGT436TCGTGGGTGTGGTGTACTGTTTGGTGAGCTGGACCGTGGGCCTTCCTAAG
UCRVU04_CCNI578_b1 Cowpea 524B Mixed Tissue and Conditions cDNA Library UCRVU04-1 Vigna unguiculata cDNA clone CCNI578, mRNA sequence.
FC456991.1:490-509
ACCCGTACTTCGTATCCGTCATCCATTTAT490TCGTGGGTGTGGTGTACTGTTTGTTGAGCTGGACCGTGGGCCTTCCTAAG
Pv012C_M13F_F06.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA sequence.
FE683875.1:420-439
ATCCGTACTTCGTATCGGTTATCCATTTAT420TCGTGGGTGTGGTGTACTGTTTGTTGAGCTGGACCGTGGGCCTTCCTAAG
Pv011C_M13F_G10.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA sequence.
FE683878.1:452-471
ATCCGTACTTCGTATCGGTTATCCATTTAT452TCGTGGGTGTGGTGTACTGTTTGTTGAGCTGGACCGTGGGCCTTCCTAAG
Pv055A_M13F_A12.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA sequence.
FE683879.1:411-430
ATCCGTACTTCGTATCGTTTATCCATTTAT411TCGTGGGTGTGGTGTACTGTTTGTTGAGCTGGACCGTGGGCCTTCCTAAG
Pv054C_M13F_D09.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA sequence.
FE683882.1:55-74
ATCCGTACTTCGTATCGGTTATCCATTTAT55TCGTGGGTGTGGTGTACTGTTTGTTGAGCTGGACCGTGGGCCTTCCTAAG
Pv015A_M13F_F12.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA sequence.
FE683883.1:77-96
ATCCGTACTTCGTATCGGTTATCCATTTAT77TCGTGGGTGTGGTGTACTGTTTGTTGAGCTGGACCGTGGGCCTTCCTAAG
Pv015D_M13F_E02.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA sequence.
FE683885.1:89-108
ATCCTTACTTCGTATCGGTTATCCATTTAT89TCGTGGGTGTGGTGTACTGTTTGTTGAGCTGGACCGTGGGCCTTCCTAAG
Pv018B_M13F_C09.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA sequence.
FE683889.1:417-436
ATCCGTACTTCGTATCGGTTATCCATTTAT417TCGTGGGTGTGGTGTACTGTTTGTTGAGCTGGACCGTGGGCCTTCCTAAG
UCRVU04_CCNI11420_b1 Cowpea 524B Mixed Tissue and Conditions cDNA Library UCRVU04-1-2 Vigna unguiculata cDNA clone CCNI11420.b1, mRNA sequence.
FG810117.1:467-486
ACCCGTACTTCGTATCCGTCATCCATTTAT467TCGTGGGTGTGGTGTACTGTTTGTTGAGCTGGACCGTGGGCCTTCCTAAG
UCRVU04_CCNI8408_b1 Cowpea 524B Mixed Tissue and Conditions cDNA Library UCRVU04-1-2 Vigna unguiculata cDNA clone CCNI8408.b1, mRNA sequence.
FG824733.1:500-519
TATGCAGCTTCGTATCCGTCATCCATTTAT500TCGTGGGTGTGGTGTACTGTTTGTTGAGCTGGACCGTGGGCCTTCCTAAG
UCRVU05_CCNN2249_b1 Cowpea IT84S-2049 Mixed Tissue and Conditions cDNA Library UCRVU05-2-2 Vigna unguiculata cDNA clone CCNN2249.b1, mRNA sequence.
FG837467.1:488-507
ACCCGTACTTCGTATCCGTCATCCATTTAT488TCGTGGGTGTGGTGTACTGTTTGTTGAGCTGGACCGTGGGCCTTCCTAAG
UCRVU05_CCNN6750_b1 Cowpea IT84S-2049 Mixed Tissue and Conditions cDNA Library UCRVU05-2-2 Vigna unguiculata cDNA clone CCNN6750.b1, mRNA sequence.
FG845135.1:487-506
ACCCGTACTTCGTATCCGTCATCCATTTAT487TCGTGGGTGTGGTGTACTGTTTGTTGAGCTGGACCGTGGGCCTTCCTAAG
UCRVU05_CCNN15009_b1 Cowpea IT84S-2049 Mixed Tissue and Conditions cDNA Library UCRVU05-2-2 Vigna unguiculata cDNA clone CCNN15009.b1, mRNA sequence.
FG847197.1:488-507
ACCCGTACTTCGTATCCGTCATCCATTTAT488TCGTGGGTGTGGTGTACTGTTTGTTGAGCTGGACCGTGGGCCTTCCTAAG
UCRVU05_CCNN19502_b1 Cowpea IT84S-2049 Mixed Tissue and Conditions cDNA Library UCRVU05-2-2 Vigna unguiculata cDNA clone CCNN19502.b1, mRNA sequence.
FG855045.1:487-506
ACCCGTACTTCGTATCCGTCATCCATTTAT487TCGTGGGTGTGGTGTACTGTTTGTTGAGCTGGACCGTGGGCCTTCCTAAG
UCRVU05_CCNN20579_b1 Cowpea IT84S-2049 Mixed Tissue and Conditions cDNA Library UCRVU05-2-2 Vigna unguiculata cDNA clone CCNN20579.b1, mRNA sequence.
FG856257.1:490-509
ACCCGTACTTCGTATCCGTCATCCATTTAT490TCGTGGGTGTGGTGTACTGTTTGTTGAGCTGGACCGTGGGCCTTCCTAAG
UCRVU07_CCNP14552_b1 Cowpea UCR 779 Mixed Tissue and Conditions cDNA Library UCRVU07-1-2 Vigna unguiculata cDNA clone CCNP14552.b1, mRNA sequence.
FG882064.1:255-274
ACCCGTACTTCGTATCCGTCATCCATTTAT255TCGTGGGTGTGGTGTACTGTTTGTTGAGCTGGACCGTGGGCCTTCCTAAG
UCRVU07_CCNP9621_b1 Cowpea UCR 779 Mixed Tissue and Conditions cDNA Library UCRVU07-1-2 Vigna unguiculata cDNA clone CCNP9621.b1, mRNA sequence.
FG887420.1:302-321
ACCCGTACTTCGTATCCGTCATCCATTTAT302TCGTGGGTGTGGTGTACTGTTTGTTGAGCTGGACCGTGGGCCTTCCTAAG
UCRVU08_CCNS2314_b1 Cowpea IT97K-461-4 Mixed Tissue and Conditions cDNA Library UCRVU08-1-2 Vigna unguiculata cDNA clone CCNS2314.b1, mRNA sequence.
FG902482.1:490-509
ACCCGTACTTCGTATCCGTCATCCATTTAT490TCGTGGGTGTGGTGTACTGTTTGTTGAGCTGGACCGTGGGCCTTCCTAAG
UCRVU08_CCNS4054_b1 Cowpea IT97K-461-4 Mixed Tissue and Conditions cDNA Library UCRVU08-1-2 Vigna unguiculata cDNA clone CCNS4054.b1, mRNA sequence.
FG905514.1:490-509
ACCCGTACTTCGTATCCGTCATCCATTTAT490TCGTGGGTGTGGTGTACTGTTTGTTGAGCTGGACCGTGGGCCTTCCTAAG
UCRVU09_CCNT13153_b1 Cowpea UCR 707 Mixed Tissue and Conditions cDNA Library UCRVU09-1-2 Vigna unguiculata cDNA clone CCNT13153.b1, mRNA sequence.
FG934552.1:151-170
ACCCGTACTTCGTATCCGTCATCCATTTAT151TCGTGGGTGTGGTGTACTGTTTGTTGAGCTGGACCGTGGGCCTTCCTAAG
UCRVU09_CCNT1741_b1 Cowpea UCR 707 Mixed Tissue and Conditions cDNA Library UCRVU09-1-2 Vigna unguiculata cDNA clone CCNT1741.b1, mRNA sequence.
FG941168.1:492-511
ACCCGTACTTCGTATCCGTCATCCATTTAT492TCGTGGGTGTGGTGTACTGTTTGTTGAGCTGGACCGTGGGCCTTCCTAAG
Arachis hypogaea mRNA, clone: AHCG04E20, 5' end sequence.
FS961732.1:415-434
ACCCATACTTCGTGTCGGTTATTCATTTGT415TCGTGGGTGTGGTGTACTGTTTGGTGAGCTGGACCGTGGGCCTTCCTAAG
Arachis hypogaea mRNA, clone: AHCL01G09, 5' end sequence.
FS966606.1:216-235
ACCCATACTTCGTGTCGGTTATTCATTTGT216TCGTGGGTGTGGTGTACTGTTTGGTGAGCTGGACCGTGGGCCTTCCTAAG
TSA: Arachis duranensis DurSNP_c838.Ardu mRNA sequence.
HP000837.1:167-186
ACCCATACTTCGTGTCGGTTATTCATTTGT167TCGTGGGTGTGGTGTACTGTTTGGTGAGCTGGACCGTGGGCCTTCCTAAG
TSA: Bituminaria bituminosa cultivar A13.1 isotig00054.Bibileaf mRNA sequence.
JL856216.1:464-483
ATCCATACTTCGTATCGGTGATCCATTTAT464TCGTGGGTGTGGTGTACTGTTTGGTGAGCTGGACCGTGGGTCTTCCCAAG
TSA: Bituminaria bituminosa cultivar A13.1 isotig00055.Bibileaf mRNA sequence.
JL856217.1:464-483
ATCCATACTTCGTATCGGTGATCCATTTAT464TCGTGGGTGTGGTGTACTGTTTGGTGAGCTGGACCGTGGGTCTTCCCAAG
TSA: Bituminaria bituminosa cultivar A13.1 isotig00059.Bibileaf mRNA sequence.
JL856221.1:418-437
ATCCATACTTCGTATCGGTGATCCATTTAT418TCGTGGGTGTGGTGTACTGTTTGGTGAGCTGGACCGTGGGTCTTCCCAAG
TSA: Bituminaria bituminosa cultivar A13.1 isotig00060.Bibileaf mRNA sequence.
JL856222.1:418-437
ATCCATACTTCGTATCGGTGATCCATTTAT418TCGTGGGTGTGGTGTACTGTTTGGTGAGCTGGACCGTGGGTCTTCCCAAG
TSA: Arachis duranensis Aduranensis_small_rep_c305_2 mRNA sequence.
JR342706.1:63-82
ACCCATACTTCGTGTCGGTTATTCATTTGT63TCGTGGGTGTGGTGTACTGTTTGGTGAGCTGGACCGTGGGCCTTCCTAAG
CccaBb036-F9JF CccABb Cajanus cajan genomic clone CccaBb036-F9, genomic survey sequence.
FI272476.1:733-752
TATGCAGCTTCGTATCTGTTATCCATTTAT733TCGTGGGTGTGGTGTACTGTTTGATTAGCTGGACCGTGGG
VUK085O03.R VUK Phaseolus vulgaris genomic 3', genomic survey sequence.
JY881668.1:493-512
TATGCAGCTTCGTATCGGTTATCCATTTAT493TCGTGGGTGTGGTGTACTGTTTGTTGAGCTGGACCGTGGGCCTTCCTAAG
Vigna unguiculata subsp. unguiculata cultivar IT97K-499-35 clone BAC M054I20, *** SEQUENCING IN PROGRESS ***, 17 unordered pieces.
AC274193.1:29472-29491
TATGCAGCTTCGTATCCGTCATCCATTTAT29472TCGTGGGTGTGGTGTACTGTTTGTTGAGCTGGACCGTGGGCCTTCCTAAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ACAGTACACCACACCCACGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ACAGTACACCACACCCACGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.385 | 0.376 | search_plus_done; http://172.18.8.135:50400/match?q=ACAGTACACCACACCCACGA&k=0&no_gap=0&offset=0&limit=50
2.867 | 2.482 | search_minus_done; http://172.18.8.135:50400/match?q=TCGTGGGTGTGGTGTACTGT&k=0&no_gap=0&offset=0&limit=41
2.900 | 0.033 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).