GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 10:29:41, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Flame chromosome 5.
CP141914.1:6646731-6646751
CCCCCTTAAATATAGAATTTTTCATTCAAT6646731ACATATAGCACCCTTAGGAAACTACACTAGGACAAAAAATGAGCATAGAAC
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141931.1:6891646-6891666
CCCCCTTAAATATAGAATTTTTCATTCAAT6891646ACATATAGCACCCTTAGGAAACTACACTAGGACAAAAAATGAGCAAAGAAC
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141957.1:6319191-6319211
CCCCCTTAAATATAGAATTTTTCATTCAAT6319191ACATATAGCACCCTTAGGAAACTACACTAGGACAAAAAATGAGCATAGAAC
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141974.1:6808198-6808218
CCCCCTTAAATATAGAATTTTTCATTCAAT6808198ACATATAGCACCCTTAGGAAACTACACTAGGACAAAAAATGAGCATAGAAC
Malus x robusta genome assembly, chromosome: 2.
OY720326.1:6602553-6602573
CCCCCTTAAATATAGAATTTTTCATTCAAT6602553ACATATAGCACCCTTAGGAAACTACACTAGGACAAAAAATGAGCAAAGAAC
Pyrus communis genome assembly, chromosome: 2.
OY757069.1:5358630-5358650
CCCCCTTACATATAGAATTTCTCCTTCAAT5358630ACATATAGCACCCTTAGGAAACTACACTAGGACAAAAAATGAGCAAACTAT
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143362.1:39938447-39938467
GTTCTTTGCTCATTTTTTGTCCTAGTGTAG39938447TTTCCTAAGGGTGCTATATGTATTGAATGAAAAATTCTATATTTAAGGGGG
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143379.1:36657386-36657406
GTTCTTTGCTCATTTTTTGTCCTAGTATAG36657386TTTCCTAAGGGTGCTATATGTATTGAATGAAAATTTCTATATTTAAGGGGG
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:40236283-40236303
GTTCTTTGCTCATTTTTTGTCCTAGTGTAG40236283TTTCCTAAGGGTGCTATATGTATTGAATGAAAAATTCTATATTTAAGGGGG
Malus domestica genome assembly, chromosome: 5.
OU696681.1:39527478-39527498
GTTCTTTGCTCATTTTTTGTCCTAGTGTAG39527478TTTCCTAAGGGTGCTATATGTATTGAATGAAAAATTCTATATTTAAGGGGG
Malus domestica genome assembly, chromosome: 5.
OU744546.1:39086032-39086052
GTTCTTTGCTCATTTTTTGTCCTAGTGTAG39086032TTTCCTAAGGGTGCTATATGTATTGAATGAAAAATTCTATATTTAAGGGGG
Malus domestica genome assembly, chromosome: 5.
OU744957.1:39548536-39548556
GTTCTTTGCTCATTTTTTGTCCTAGTGTAG39548536TTTCCTAAGGGTGCTATATGTATTGAATGAAAAATTCTATATTTAAGGGGG
Malus domestica genome assembly, chromosome: 5.
OU744995.1:40387183-40387203
GTTCTTTGCTCATTTTTTGTCCTAGTGTAG40387183TTTCCTAAGGGTGCTATATGTATTGAATGAAAAATTCTATATTTAAGGGGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ACATATAGCACCCTTAGGAAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ACATATAGCACCCTTAGGAAA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.096 | 0.088 | search_plus_done; http://172.18.8.135:50400/match?q=ACATATAGCACCCTTAGGAAA&k=0&no_gap=0&offset=0&limit=50
0.117 | 0.021 | search_minus_done; http://172.18.8.135:50400/match?q=TTTCCTAAGGGTGCTATATGT&k=0&no_gap=0&offset=0&limit=44
0.121 | 0.004 | cgi_end;

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