GGGenome | Results

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2025-04-08 21:50:10, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Solanum melongena mRNA, clone: MLF04O06, 5'end, expressed in leaf at fully expanded leaf.
FS025178.1:250-269

ATTATTCGTCATTGTCAGCTTCAGCAGCTG250CAATAGAGGCGGAACGATGTATAAAGGAAGGACCCAGAAATAACTGGACT

Solanum melongena mRNA, clone: SmFL24B03, 5'end.
FS082423.1:254-273

ATTATTCGTCATTGTCAGCTTCAGCAGCTG254CAATAGAGGCGGAACGATGTATAAAGGAAGGACCCAGAAATAACTGGACT

Solanum melongena mRNA, clone: SmFL24B04, 5'end.
FS082425.1:231-250

ATTATTCGTCATTGTCAGCTTCAGCAGCTG231CAATAGAGGCGGAACGATGTATAAAGGAAGGACCCACAAATAACTGGACT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.098 | 0.089 | search_plus_done; http://172.18.8.135:50400/match?q=ACATCGTTCCGCCTCTATTG&k=0&no_gap=0&offset=0&limit=50
0.330 | 0.232 | search_minus_done; http://172.18.8.135:50400/match?q=CAATAGAGGCGGAACGATGT&k=0&no_gap=0&offset=0&limit=50
0.332 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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