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ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-12 12:27:37, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Aegilops longissima genome assembly, chromosome: 6S.
LR881074.1:42245401-42245420
AACATTCTTATTCATTCTTGTCCAGAGTTG42245401ACATCTTTGCCGTTTGATAGGCTCCACGGTTTCTCTTGTTTGGAGGAGAT
Azorinus chamasolen genome assembly, chromosome: 7.
OY755241.1:40007048-40007067
TCACCATTTCTAGTTGTAGATTATTCGTTA40007048ACATCTTTGCCGTTTGATAGGGTCTGCGCTGTTTGCAAATGGAATGAAAG
TSA: Mesembryanthemum crystallinum mRNA, contig: Mcr004562.001.
FX897300.1:20-39
TCCAAAATAAGTTCTACGG20CTATCAAACGGCAAAGATGTCGACGGCGAGATTCCTTTTCGCAAATGGCG
Brassica napus cultivar Xiang5A chromosome 17.
CP123892.1:12179805-12179824
ATGTCTGTTTAAGGAGATAGAAACCGATAT12179805CTATCAAACGGCAAAGATGTTTGTCAGGAAACATAAACTTTTAAGAACTT
Brassica napus genome assembly, chromosome: A05.
HG994359.1:12160212-12160231
ATGTCTGTTTAAGGAGATAGAAACCGATAT12160212CTATCAAACGGCAAAGATGTTTGTCAGGAAACATAAACTTTTAAGAACTT
Brassica rapa genome, scaffold: A05.
LR031570.1:17916063-17916082
ATGTCTGTTTAAGGAGATAGAAACCGATAT17916063CTATCAAACGGCAAAGATGTTTGTCAGGAAACATAAACTTTTAAGAACTT
Brassica rapa genome assembly, chromosome: A05.
LS974621.2:12006176-12006195
ATGTCTGTTTAAGGAGATAGAAACCGATAT12006176CTATCAAACGGCAAAGATGTTTGTCAGGAAACATAAACTTTTAAGAACTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ACATCTTTGCCGTTTGATAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ACATCTTTGCCGTTTGATAG | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.342 | 0.334 | search_plus_done; http://172.18.8.135:50400/match?q=ACATCTTTGCCGTTTGATAG&k=0&no_gap=0&offset=0&limit=50
0.436 | 0.093 | search_minus_done; http://172.18.8.135:50400/match?q=CTATCAAACGGCAAAGATGT&k=0&no_gap=0&offset=0&limit=48
0.439 | 0.003 | cgi_end;

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