GGGenome | Results

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2025-04-06 00:33:58, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Lotus japonicus genomic DNA, chromosome 5, clone: LjB14G21, BM1886.
AP010568.1:29591-29610

TATACATAGGCCATTGTTACGTATTGTTAT29591ACATGATATTTTACCCTCCCTCTATTTTTATATGATGCAGTTTTATTTAA

Lotus japonicus B-129 DNA, chromosome 5, complete sequence.
AP022633.1:31106994-31107013

TATACATAGGCCATTGTTACGTATTGTTAT31106994ACATGATATTTTACCCTCCCTCTATTTTTATATGATGCAGTTTTATTTAA

Capsicum annuum Takanotsume DNA, chromosome 6, sequence.
AP026701.1:182799342-182799361

GTCTCTACTCTTGTCTCTGTATCTGTAGGC182799342ACATGATATTTTACCCTCCCTGAGTTTTAACCTATTTTTCGGCATTAAAT

Cardamine chenopodiifolia genome assembly, chromosome: 21.
OZ000479.1:9411530-9411549

AAAGTTCAGAAAAATTAGGACGGGAACAAA9411530ACATGATATTTTACCCTCCCCAAAATATCTAGACCTATATAATGACAGTT

Sthenelais limicola genome assembly, chromosome: 6.
OW804099.1:14021074-14021093

TCAATGACCTCAATTACCTTTTTTTTAATT14021074GGGAGGGTAAAATATCATGTCAACTATGTATAGATTTTAAACCGCATGAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.109 | 0.100 | search_plus_done; http://172.18.8.135:50400/match?q=ACATGATATTTTACCCTCCC&k=0&no_gap=0&offset=0&limit=50
0.136 | 0.027 | search_minus_done; http://172.18.8.135:50400/match?q=GGGAGGGTAAAATATCATGT&k=0&no_gap=0&offset=0&limit=46
0.137 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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