GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 09:18:22, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Allium fistulosum mRNA, contig: AFU_08169.
FX561894.1:973-994
GTTGAAAGTTTTGAAATGTTAACTGAGAAT973ACCAAAACTGGAGTTTGCTACTATTCTACTATGGAAAAGAATGAAGAAGAAG
TSA: Allium cepa CUDHLF2_5351 mRNA sequence.
JR848169.1:334-355
GTTGAAAGTTTTGAAATGTTAACTGAGAAT334ACCAAAACTGGAGTTTGCTACTATTCTACTATGGAAAAGAATGAAGAAGAAC
TSA: Allium sativum Unigene47846_All.Ascvb, mRNA sequence.
JV274272.1:166-187
GTGGAAAGCTTTGAAATGTTAACTGAGAAT166ACCAAAACTGGAGTTTGCTACTATTCTACCATGGAA
Allium cepa genome assembly, chromosome: 8.
LR994636.1:162598784-162598805
GTTGAAAGTTTTGAAATGTTAACTGAGAAT162598784ACCAAAACTGGAGTTTGCTACTATTCTACTATGGAAAAGAATGAAGAAGAAC
Carassius carassius genome assembly, chromosome: 33.
OY720500.1:12442296-12442317
ATTTTGCTTTCCTGCATTTAGCAGTTGCAA12442296AGTAGCAAACTCCAGTTTTGGTGTTCCGTTGCTAATATTATGCTCCGTTTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ACCAAAACTGGAGTTTGCTACT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ACCAAAACTGGAGTTTGCTACT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.125 | 0.117 | search_plus_done; http://172.18.8.135:50400/match?q=ACCAAAACTGGAGTTTGCTACT&k=0&no_gap=0&offset=0&limit=50
0.149 | 0.024 | search_minus_done; http://172.18.8.135:50400/match?q=AGTAGCAAACTCCAGTTTTGGT&k=0&no_gap=0&offset=0&limit=46
0.149 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).