GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 12:00:59, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

RTDS3_25_E09.b1_A022 Drought-stressed loblolly pine roots DS3 Pinus taeda cDNA clone RTDS3_25_E09_A022 3', mRNA sequence.
CF399623.1:485-504
CAACAGCCCTGGTGCAATGGTTTGGTCAGA485ACCAAAATGTGATTGAATAGAGGATTTAACTATATATTCAACACCAGGAC
Quercus dentata isolate Qdleaves-2020 chromosome 12.
CP116455.1:41441732-41441751
TGTGTGTAGGACAGTCAGACCCAATAAAAT41441732ACCAAAATGTGATTGAATAGGGTAATTCATGCGCGATCAAGTGCGCGTGG
Quercus variabilis isolate HB chromosome 12b.
CP129444.1:35885543-35885562
TGGGTGTAGGACAGTCGGACCCAATAAAAT35885543ACCAAAATGTGATTGAATAGGGTATTTCATGCGCGATCAAGTGCGCGTGG
Quercus variabilis isolate HB chromosome 12a.
CP129456.1:36388646-36388665
TGGGTGTAGGACAGTCGGACCCAATAAAAT36388646ACCAAAATGTGATTGAATAGGGAATTTCATGCGCGATCAAGTGCGCGTGG
Quercus cerris genome assembly, chromosome: 12.
OY770017.1:36290155-36290174
TGGGTGTAGGACAGTCGGACCCAATAAAAT36290155ACCAAAATGTGATTGAATAGGGTATTTCATGCGCGATCAAGTGCGCGTGG
Metridium senile genome assembly, chromosome: 15.
OX459109.1:5965393-5965412
CCCCTTCTTGATCAAATATCTAGAATGATA5965393ACCAAAATGTGATTGAATAGCTTAGATTTTTACTTAATCATCATGTGGGC
Diplosoma virens genome assembly, chromosome: 16.
OY796895.1:35863615-35863634
GTTCAGGTCTTATTTTATGTTTAGAACATG35863615ACCAAAATGTGATTGAATAGGCCTTGTGATTTGCAAAAGTAAAGACTTGT
Quercus robur genome assembly, chromosome: 12.
OW028776.1:3431225-3431244
CCACGCGCACTTGATCGCGCATGAATTACC3431225CTATTCAATCACATTTTGGTATTTTATTGGGTCCGACTGTCCTACACACA
Phosphuga atrata genome assembly, chromosome: 11.
OX155902.1:47879752-47879771
CACCCCGTGGGACGGATCCCTGTCACTGTC47879752CTATTCAATCACATTTTGGTCCCACTGTCCCATCCCGTAAACTTAAAATT
Pyrrhosoma nymphula genome assembly, chromosome: 7.
OY754334.1:12114797-12114816
CCGTGTGGAATTCTGTTTCCGCTGATAGAG12114797CTATTCAATCACATTTTGGTATCAATTCCGATTCCATTCGTAGTGGCCAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/ACCAAAATGTGATTGAATAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : ACCAAAATGTGATTGAATAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.141 | 0.132 | search_plus_done; http://172.18.8.135:50400/match?q=ACCAAAATGTGATTGAATAG&k=0&no_gap=0&offset=0&limit=50
0.175 | 0.034 | search_minus_done; http://172.18.8.135:50400/match?q=CTATTCAATCACATTTTGGT&k=0&no_gap=0&offset=0&limit=43
0.177 | 0.002 | cgi_end;

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