GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 18:32:59, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

uncultured Bryobacterales bacterium isolate bca447ce-52f6-4023-9bd2-d2f45ab2d451 genome assembly, chromosome: 1.
OX638379.1:3834466-3834485
TCCTCCTCTTGGAGGCAGCGGGGCAGTCCG3834466ACCAAGCTGCAAGAACCTGTCAGAGGCTCCGAGAGATCAATCCGGCACTG
Raphanus sativus genome assembly, chromosome: 5.
OY743211.1:39310106-39310125
GTTCCAGTCCTCGTTCCTCAAACTCCTCCG39310106ACCAAGCTGCAAGAACCTGTCTCCCCACACTTCTAATAAGACAAACGCCT
Raphanus sativus mRNA, clone: RSCS15H16, 5' end sequence.
FY451250.1:487-506
AGGCGTTTGTCTTATTAGAAGTGTGGGGAG487ACAGGTTCTTGCAGCTTGGTCGGAGGAGTTTGAGGAACGAGGACTGGAAC
Raphanus sativus mRNA, clone: RSCS19N08, 5' end sequence.
FY452817.1:485-504
AGGCGTTTGTCTTATTAGAAGTGTGGGGAG485ACAGGTTCTTGCAGCTTGGTCGGAGGAGTTTGAGGAACGAGGACTGGAAC
TSA: Raphanus sativus var. sativus RNA, contig: WG3_10396.
FX661049.1:569-588
AGGCGTTCGTCCTTTTGGAAGTGTGGGGAG569ACAGGTTCTTGCAGCTTGGTCGGAGGAGTTTGAGGAACGAGGACTGGAAC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_12501.
FX791960.1:460-479
AGGCGTTCGTCCTTTTGGAAGTGTGGGGAG460ACAGGTTCTTGCAGCTTGGTCGGAGGAGTTTGAGGAACGAGGACTGGAAC
TSA: Raphanus sativus RS15991 mRNA sequence.
JT800538.1:297-316
AGGCGTTTGTCTTATTAGAAGTGTGGGGAG297ACAGGTTCTTGCAGCTTGGTCGGAGGAGTTTGAGGAACGAGGACTGGAAC
Raphanus sativus cultivar WK10039 clone RsH006A10, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.
AC255215.1:29201-29220
AGGCGTTCGTCCTTTTGGAAGTGTGGGGAG29201ACAGGTTCTTGCAGCTTGGTCGGAGGAGTTTGAGGAACGAGGACTGGAAC
Raphanus sativus genome assembly, chromosome: 4.
LR778313.1:4722844-4722863
AGGCGTTTGTCTTATTAGAAGTGTGGGGAG4722844ACAGGTTCTTGCAGCTTGGTCGGAGGAGTTTGAGGAACGAGGACTGGAAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ACCAAGCTGCAAGAACCTGT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ACCAAGCTGCAAGAACCTGT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.297 | 0.289 | search_plus_done; http://172.18.8.135:50400/match?q=ACCAAGCTGCAAGAACCTGT&k=0&no_gap=0&offset=0&limit=50
0.581 | 0.284 | search_minus_done; http://172.18.8.135:50400/match?q=ACAGGTTCTTGCAGCTTGGT&k=0&no_gap=0&offset=0&limit=48
0.586 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).